Protein Info for RPSI07_RS16835 in Ralstonia solanacearum PSI07

Annotation: HAMP domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details PF02203: TarH" amino acids 1 to 169 (169 residues), 155.3 bits, see alignment E=3.2e-49 PF12729: 4HB_MCP_1" amino acids 5 to 184 (180 residues), 74.5 bits, see alignment E=1.6e-24 PF00672: HAMP" amino acids 208 to 259 (52 residues), 39.1 bits, see alignment 1.5e-13 PF00015: MCPsignal" amino acids 322 to 478 (157 residues), 185.9 bits, see alignment E=1.2e-58

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_1909)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (513 amino acids)

>RPSI07_RS16835 HAMP domain-containing protein (Ralstonia solanacearum PSI07)
MSARLTIRTRLVLTVSILFLLALLIGMAGLLGLRDANRAHEETYSNQFPSALALGESDLS
LTRARTALDKAMLYPNDKDAMQLLDRTEELIARSDAAWKKYLALPHGDEETRLSKEVGTK
REAASGSLRDIIKALRGGDRATADTIMDKRVSKSFREANDASQALGKQQLLFSKANFDDS
QQAYERFRNLVIAAIVLALVVSAGCAWLLLRAIVGPLNATLAQFDRIAAGDLTQSVRIDR
RDEMGRLLEGLARMQSALTDTVRRVRHGSESIGAATKQIAAGNADLSQRTEEQASSLEET
ASSMEEMTSIVRQNADNARQASQLADSASAVATQGGAVVTDVVATMREISTSSRTVSEII
GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKEMIEASL
SKVETGSKLAEQAGSTMEDIVTSIRRVTDIMGEIAAASSEQSSGIEQVNKAVTLMDEATQ
QNAALVEQAAAAAESLEEQAQALNEAIAAFRLA