Protein Info for RPSI07_RS16620 in Ralstonia solanacearum PSI07

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 113 to 140 (28 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 230 to 251 (22 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details amino acids 296 to 314 (19 residues), see Phobius details amino acids 320 to 341 (22 residues), see Phobius details amino acids 353 to 377 (25 residues), see Phobius details amino acids 384 to 404 (21 residues), see Phobius details PF03092: BT1" amino acids 36 to 417 (382 residues), 43.6 bits, see alignment E=1.7e-15 PF07690: MFS_1" amino acids 44 to 365 (322 residues), 55.2 bits, see alignment E=5.9e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_1864)

Predicted SEED Role

"Folate carrier, cyanobacterial type"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>RPSI07_RS16620 MFS transporter (Ralstonia solanacearum PSI07)
MLAASDRNGSEGRDRTLLYFGWLTLFIYLATPAGYLVDIQTSYLLKNQLHATATQISTFR
LITGIPVYIAFAFGLVRDQWNPLGLRDRGFFLIFAPATAVAFIWMAFSGFSYAGLVVGML
LAMLSSRFIAAAYQGLIALVGQEKLMSGRLSALWNVVGSVPVVAGAFASGYISDHLAAKE
AFFLVAMVTLLIAVLGLWKPISVFGHIYEKPQARGADLVGNVRRLVKHQAVYPAVLICFL
WNFAPGSATPLQFYLTNELHASDSVYSYYNGIFAAAFIPTFLLYGFLCKKVSLNTLLWWG
TIAAVPQMIPLAFIHSANLALVLAAPIGLMGGVATAAYFDLAMRSCPPGLQGTLMMLVDG
VFALSARAGDLLGSWIYNSSPTHGFTYCVIATTVVYALILPLIPLTPKALIATKDGEPNP
EVEADVLNEIRETGRT