Protein Info for RPSI07_RS16605 in Ralstonia solanacearum PSI07

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 864 PF01266: DAO" amino acids 30 to 365 (336 residues), 40.3 bits, see alignment E=7.3e-14 PF13450: NAD_binding_8" amino acids 33 to 70 (38 residues), 22.4 bits, see alignment (E = 3e-08) PF07714: PK_Tyr_Ser-Thr" amino acids 604 to 790 (187 residues), 54.2 bits, see alignment E=3.3e-18 PF00069: Pkinase" amino acids 609 to 846 (238 residues), 94.9 bits, see alignment E=1.4e-30

Best Hits

Predicted SEED Role

"Serine/threonine protein kinase (EC 2.7.11.1)" (EC 2.7.11.1)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.11.1

Use Curated BLAST to search for 2.7.11.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (864 amino acids)

>RPSI07_RS16605 FAD-dependent oxidoreductase (Ralstonia solanacearum PSI07)
MKAAPFLTVPKSLDAYAIDSSIPYQFKPSKIAIIGGGLTGVISALKLRSLGHEVSLYEAN
EDICLEASKIPAHCYGAPGYCHLPKDEQIEIFRSGLAFAKLFPQAISLRPTIFALRQNDR
VRVTNDKNGRLRTIDDLKNSVKLAENEYKKAVESDPKSEVFGPVGNYQSGYTREQVQVLR
NQPLTGLPEKNDEWVANWAHEMSEEALSELQYPVFLVKEPEINMLRFRELARSALGELGV
DAHIGETVNDLASQAGKPGIMINQAHFDYAVNCSGAESGMHDDKREAISERTVIVKGAGV
ASLPSPIDAMPQMYIMGAPMVHVSPFESGSAVINVTTPECTYVENGEARSKETRSQVELS
EHMRSVMTSAGKGPHLYRTNNMISELGKLMPRMFGGAPEAFLGGHVCTVGSSDQRGTSIA
SVTDNALTIIAPKATSTVTLDLAGKISTASRFNVHLPLKQEGDLQIRMDQDVLADKAAEK
ARKMGLPVGMSGVLDRQSGRARQSGRVASGFILPRGAEKMATGDVFDAAFRDSSGRKHVV
IDGIAYGQDRRLGSGFGGEAFIYRDPVASHEIVVKEYFRLRSQASPGDMDVNPPKDAGKR
AELEKIQMEDFMIEKSAFDALATHPAAKNIAHALRAGTVDGRFTIVMPYFRGGSVRDLCK
NLDKAVEDGIISVGQRRDSAIYIMRGILNGMKYLSPILIHRDLKPDNVLLHIEKERDGTR
VLIPKIADFGTSALGTSSDLPVVTTPQYKSPEYLRAEQQGRGEHTPAQDVWSAGISLHEL
LTGRRPFDGDLPKDEHGIYGAIKNYASGNTEILPADQSKAADLVRIMMNPSSNRATPAEL
LDHEAFHEINEKECQKMLSLIHRS