Protein Info for RPSI07_RS16570 in Ralstonia solanacearum PSI07
Annotation: Type III effector protein (Skwp 4)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"FIG00974765: hypothetical protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (3089 amino acids)
>RPSI07_RS16570 Type III effector protein (Skwp 4) (Ralstonia solanacearum PSI07) MSRESHGNASPHTSPPPARSRTTRAPGALESLHRVRRSTSLAVAARQPTDGASASRPVAR GPLRIAAARPVRADSRGGIPDGDVRRLPTRAQPLPPKRGRGVEARADPRVTSRPGPGDAP ALQSAKRARYGRALAEPSASRRIEPGQEPTREQLIGEGAWLDRAARSLLSAQHKEQCVRL QGLAKQARPGSARAQKVDPKSCLQLAQDNIVAQRNGYGLALVFLGQAVSSEENTRRVTDY FLVLSAAALRAPPPVRQELQRCADVAAHYLSKTNWFEGAPLYQFVHVSNLLSKYANRPAC LNAIAWVAGQVLMPEVLPPLSAKQLSLLANAFSKNQGSEHCEQAVARIGRQLLHERVGEY AAQSVSMLLNAFSKWPGNLACRTATERLAARLADDADLRQVMTAQAVADSLNALGKWPDS TDCRTAAECLATRLIDDDRLRQSLDATQVANSIGAMGRWPDSGNCRAAAERLAVRLTDDA KLRRSMSAQQVAGSLNGLSKWPDAVDCRTAAGHLAARLAADTKLRRDMNAQEIANALGAL GKWPDAADCLSAAECLAIRLAGSDKLVLAMKSQQVSNALNGLSKWPDSIDCRTAAECLAI RLLDDDGRLLADLDVQGVANSLNALSKWPDASACRATAEPLAARIVHEPMLGQSMNVQQF ANALNALAKWPGAADCRAAAERLAVRLTADAKLWRTMNARGISNALNALAKWPDATDCRA AAERLGVRLTDDAGLPDAMDAQGMANSLNALGKWPDASPCRAAAERLAARLTDDAELRRT MSAPQIAGSLNGLSKWPDAADCRAAAECLAARLADDAVPLQAMDAQRMANALNALSKWPD STDCHAAAERLAAQLAGNAALLRAMDAQGVANALNALSKWPDSTDCRAAAECVAAELAGN AALLHAMSEQHLTSSLNALSKWPDAIDCRAAAECLAARLTGDAALQRNLGARQVANLLNA LSKWPDAADCRTAAEHLATRLVRDADLLPTLSALALSLVFNALSKWPDSADCRAAAEHLA AWLADDAELPQAMDAQAVANSLGGLGKWSDADECRAVAERLAARLATDARLRQDMSAQQV ASSLNGLSKWPGSTDCRIAAERLATRLVDEPELLQAMHAQPVANALNALSKWPDAAACRA AAQCLAVRLASSARLQQAMNEQEVTNSLNALGKWLDMDDCRAAAARLALRLAADAAFRQA LNAQGFANALNGLSKWPQDEACQAAAICLVDDLGSGGRLFNTFDLSELAQLANGMARFAL TLNDAGVHGSSDIELTDDTPLVLMRTRLRELAVHLNVRPDGLSHAGTRAIAMIFKSLAST GLQDGLRLLARQGVQRLKDLHLQTGFKPDDLETLGTLAAGLLPLARSPELKQYRSDTLQL LGQIQPDVARKVRYYVDAHANPPLPAARTWPAEDEAFGTRRPGLMFFLLLKTYAVVAGSW KLRNVPDDPARIGRRREELKAWLGNTLDQVRGRIEADLDEMSWNLIAQIEAGDEVLDALD LKLWRDLDRIVAAHPTTQLDVAAVRRELRALPEVRHLMGSDAGAATLQIIDMHGHDLRTS TPTGASGTGARPYSFFTRLTGGRLPLVEVELPGQLSAFMLARTIRHGDDLLRMDLFGGSH LTPSTTRVFEQLAGPQQVLKRYGRIPAVRLADTAPDAPLMRDVIRKLNPQREDWYRMQRA LLEVVPRDHVVEGPVRLALLADQPQGAVPAFALRTPEGEPIRLVSHDGCGFIMESLARRI PAVAQAMDAWRPSRQKGSDEAPTQRMASLPSQATHHYPRNEAVIEEARTHLRRALHADTA LWETDTFSGTRKLSKPKLYELLVGAGITGMQGIAVPSADGKLYLPGEKGAVFDRTGGPVL LGKPPYDKPNLMPIPAERVGTSAQGDATARFLETAFAFQYSYTAWDESRPHTAGHGDDAP MLHGKGVTIVVPDTLWPQDNDAQWVWSTEDMKIHSSWTQRRERDRLPARMNTVGSLRVKD VYTPGSLIAVPVDELKKRDADCDGDRVFVYAGLPKMTQAIAGFFEEREQRVGKVPSFKPP KTASAAFDEAGQYRAGRAAEVLSAVRGQELVRRMSTLQFHFWGQPQALRERIAESAIFGT YEGTRRELRRGLRRLLYDPAEATQTALQALRERARLGVEHAHHPVAREAAEVLLHQLEAF SEDTHGAHGLREPAALPPELSPALAQRFTSLAEAYTQAGTPRERLAALADHYPTALLPHP GTALPSERPPAEQLGYVPEAPLETLRNLLTLGVKVGTDAPKAVTQTDVYLKIADRLERAL RRERDRIRLMPYTKSGLLPKLRDGLNAQAEQHRLRDNPTLAAGLMEMALEELLERRLIDG APAPGALSADTETQLRQLAHNLHMTAGQAEAQMTALVRHAIQGIGVLCGEAHCLKSESSL FDKLRRMMHKTRQTPQAAAAEVSDTLRYSVVLPPETFVQGYAGILGMLDASGLTQTRVHN SFVKSNAAFKGVNVKLTGRDTGGNAIRLEIQFHTKRTFEFKERFHDAYKQAQAQQLAGAS REDQFGALAEARRAFGEIATPPGCEHITDWQTAPPHADRPHAPSAAAPRLAAAHAQTALG EHVQRLAAQARIVHQEVGPLLAALETHEDLDLRVDKHHSVPKQTASIKKKIERYQVLEGL SLEQASARVRDAMRWIVLLPANRFGIRFAHARQRLEQQGLRVTRINNGFTAPDTTYAGLN VTWRTATGSDFEIQFHTAQSLNTRNTSHKTYRKWQDLEVNIALAQDPAERQALQQANARL LSERKAQAAAVALPEGIQDIPSIRYDSSADAPLTASGRTPQPIREMPDTGPHPSRAPVLH GAGLPPPRAGTVPGSEVRDQVAAALGPHWQALRWELAGTGIALEPSVQPKRLDEQLQKIQ HGLERKTARDLQDLAGNPGLRLDWARREPLYRRVVDSRARLGAQPPLERMDPLYDTLRKL DTRGRLRQPEIERHFSIGAAQSGGDLSLFDSLYQILQRRDTTSGLQALLAGTSIHSSMGF GKYMQGLLYRGGLLRPDQDGRNDPMDLRAASVVMTALADLLDLQMVFLLRRDDGRVQLNP PVGSGTDTVFLLHEIALGTDGRVSPLWIR