Protein Info for RPSI07_RS12640 in Ralstonia solanacearum PSI07

Annotation: mechanosensitive ion channel family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 transmembrane" amino acids 27 to 45 (19 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 98 to 119 (22 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 176 to 199 (24 residues), see Phobius details amino acids 223 to 250 (28 residues), see Phobius details amino acids 252 to 277 (26 residues), see Phobius details PF00924: MS_channel_2nd" amino acids 265 to 329 (65 residues), 55.9 bits, see alignment E=3.8e-19 PF21082: MS_channel_3rd" amino acids 337 to 420 (84 residues), 41.7 bits, see alignment E=1.3e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_1023)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>RPSI07_RS12640 mechanosensitive ion channel family protein (Ralstonia solanacearum PSI07)
MNGLPLNHIALGRMIGDIVNDLGGPRFIWQLGVLVLLLGVAWLAARPIVRRLHARHVNDS
FALRFAWASLERAVFPLLGWVLVLAARYALATVMPVSVYRLAAVPLFGLAMLYLVFYVLR
RVLSANGDLHGMLMLVERVLTTLMWIGMVLYVLGVLDDAVSYLEGIQFSVGGKQKVNLAA
MLMAAVWILLTVLVAMWFGSWLDGRITRAAAIDANLKVVLSRVAKAVLLLVSLLLSLSLV
GIDLTVLSVFGGALGVGLGFGLQKIASNYVSGFIILLERSLKLGDQITVSTYTGVVTQIR
TRYTVVRNGDGDTFVPNELMVAQAVQNHNERGTVRVAVRVQATYPADPEIVLALLAACAE
GVPRVLVDPAPTAFLVAFADSGIEYELGVWIADPHNGKLGVQSDLNRAIYRRFKTAGIEI
PYPQREVRVLGPLALQQPSPGDSGASS