Protein Info for RPSI07_RS12380 in Ralstonia solanacearum PSI07

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 signal peptide" amino acids 1 to 45 (45 residues), see Phobius details transmembrane" amino acids 60 to 79 (20 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 148 to 167 (20 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 222 to 242 (21 residues), see Phobius details amino acids 254 to 271 (18 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 330 to 352 (23 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 385 to 407 (23 residues), see Phobius details amino acids 428 to 446 (19 residues), see Phobius details amino acids 495 to 513 (19 residues), see Phobius details PF06609: TRI12" amino acids 18 to 243 (226 residues), 45.5 bits, see alignment E=6e-16 PF07690: MFS_1" amino acids 30 to 436 (407 residues), 110 bits, see alignment E=1.8e-35 PF00083: Sugar_tr" amino acids 62 to 199 (138 residues), 45.1 bits, see alignment E=1.1e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_0967)

Predicted SEED Role

"FIG00973953: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (518 amino acids)

>RPSI07_RS12380 MFS transporter (Ralstonia solanacearum PSI07)
MSLQILPPASMRAFPHFSSARIHAFGLALGLSTGLDFVSSQMMAVAGQHIQGGVHADPQA
YLYAVTAYAVAAVVANLAIGRIAAHIGYRMFSLIGIVLFGVGCVVCAQSNSIDMLVAGRA
IQGLGAGGLFSASRILVQLTTDPDERIAPMLMFSVGLFGLTTLAPWICAEVLEYSEWRVI
FWLELMLAVVAWLAMFFLPPERHQPRTRAARRPHEAPPAEGQWDWIGVGAIAIGALSFLM
GLSELRYNRLTATPAIPLLLLGGAAGLLLAAHRLRTHPDPWLDLTRLNGRRYLWGIGFYG
IYYLMSGIWSYLFPAVSQGGLGFTFRTTTLFLMISGAVSTVVAVIFTIWLPVFFRKRRVI
AIGFGIYAAAALLLATSLMPGAPDYAFFPVSVLEGMTPGAVMIQVAMMTYLDLDREDFAH
GYQMKNIARQFATAVGTGLAATMLQTQQAESRALMVAHVTRFTADLQTAGPLTADRLARL
SAEIDRQATLLAGTQLFSWFAVACGVFAVVVMVQRSLR