Protein Info for RPSI07_RS10535 in Ralstonia solanacearum PSI07

Annotation: sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 transmembrane" amino acids 45 to 65 (21 residues), see Phobius details amino acids 72 to 88 (17 residues), see Phobius details amino acids 100 to 118 (19 residues), see Phobius details amino acids 130 to 163 (34 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details PF02518: HATPase_c" amino acids 327 to 431 (105 residues), 64.6 bits, see alignment E=5.5e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_0575)

Predicted SEED Role

"PUTATIVE TRANSMEMBRANE SENSOR HISTIDINE KINASE TRANSCRIPTION REGULATOR PROTEIN( EC:2.7.3.- )"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (432 amino acids)

>RPSI07_RS10535 sensor histidine kinase (Ralstonia solanacearum PSI07)
MTQDSALRHNPGRGLARVWRRLMDSISNAIVADGARATQLRRVRLAGVIGVIGHPLYFVI
WSYVFPQPYESVWLRLLCTLLFVPLLFAERVAGCRWLPTYAAFAITAGLPFAFVFLYLEN
AGTTVWAESLLIAVVILFHFSTAFALFSLVTGAAAAMALFLLVGKAVEGFPWHALLEQMP
ILAFFFVAGVLVVIRLDRQILIDQKQHGVALALGTVAHELRTPLASLALTAKGIQNRLPE
AVRADHPDLPALLQAVERMRADVLRATNSIELLVANSKDPLAVSTAWFDPHEAIRAAIDA
YPFEPGTRSHVRIAPSMGLRVLGNAGLFEHIITNLTKNALEAIQRVGKGDIRIGYERMPQ
AVEIVVRDTGAGVSPVVLKRMFQPFFSHPAHRGTGIGLTFCRKVLRGWGASISCRSVEYE
FTEFRIRFPNPR