Protein Info for RPSI07_RS10510 in Ralstonia solanacearum PSI07

Annotation: cytochrome b

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 transmembrane" amino acids 41 to 65 (25 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 132 to 154 (23 residues), see Phobius details amino acids 160 to 179 (20 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 298 to 315 (18 residues), see Phobius details amino acids 321 to 339 (19 residues), see Phobius details amino acids 346 to 363 (18 residues), see Phobius details amino acids 369 to 388 (20 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details amino acids 427 to 449 (23 residues), see Phobius details PF00033: Cytochrome_B" amino acids 31 to 226 (196 residues), 213.3 bits, see alignment E=4.4e-67 PF13631: Cytochrom_B_N_2" amino acids 108 to 279 (172 residues), 153.3 bits, see alignment E=9.3e-49 PF00032: Cytochrom_B_C" amino acids 292 to 352 (61 residues), 50 bits, see alignment E=4.6e-17 amino acids 364 to 440 (77 residues), 79 bits, see alignment E=4.5e-26

Best Hits

KEGG orthology group: K00412, ubiquinol-cytochrome c reductase cytochrome b subunit [EC: 1.10.2.2] (inferred from 100% identity to rsl:RPSI07_0571)

Predicted SEED Role

"Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)" in subsystem Ubiquinone Menaquinone-cytochrome c reductase complexes (EC 1.10.2.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.10.2.2

Use Curated BLAST to search for 1.10.2.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>RPSI07_RS10510 cytochrome b (Ralstonia solanacearum PSI07)
MAADKKVETTGLLGWVDARFPLTETWKAHLSEYYAPKNFNFWYFFGSLALLVLVIQIVTG
IFLVMNYKPDGTLNASGIPVAYASVEFIMREVPWGWLVRYMHSTGASAFFIVVYLHMFRG
MLYGSYRKPRELVWIFGCLIFLCLMAEAFMGYLLPWGQMSYWGAQVIVNLFSAIPLIGPD
LSLWIRGDYVVSDATLNRFFSFHVIAVPLVLLGLVVAHIIALHEVGSNNPDGVEIKAKKD
ERGIPLDGIPFHPYYSVHDIVGVAVFLFIFSAIVFFAPEMGGYFLEANNFIPADSLKTPS
HIAPVWYFTPFYSMLRATTSAFLPILWGFLAIMLGLLFVRCKSMRVKGVAVAVAVILALG
FAFIDAKFWGVVVMGGSVVIFFFLPWLDQSPVKSIRYRPGFHKVLLGIFVVAFAVLGYLG
IQPPSPAGSIVSQIGTIVYFAFFLAMPIWSRMGTFKPVPERVTFKPH