Protein Info for RPSI07_RS10370 in Ralstonia solanacearum PSI07

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 29 to 52 (24 residues), see Phobius details amino acids 59 to 83 (25 residues), see Phobius details amino acids 112 to 139 (28 residues), see Phobius details amino acids 145 to 169 (25 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 232 to 254 (23 residues), see Phobius details PF01061: ABC2_membrane" amino acids 15 to 225 (211 residues), 134.6 bits, see alignment E=3.6e-43 PF12698: ABC2_membrane_3" amino acids 63 to 251 (189 residues), 49.9 bits, see alignment E=2.7e-17

Best Hits

Swiss-Prot: 38% identical to YADH_ECOL6: Inner membrane transport permease YadH (yadH) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K09686, antibiotic transport system permease protein (inferred from 100% identity to rsl:RPSI07_0543)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>RPSI07_RS10370 ABC transporter permease (Ralstonia solanacearum PSI07)
MSAIPQIRPGRWTGFRTLLYKEVLRFWKVSFQTVAAPVLTALLYLLIFGHVLEDHVQVFG
QISYTAFLIPGLVMMSVLQNAFANSSSSLIQSKITGNLVFIMLPPLSHWEMFGAYVVASV
IRGLAVGAGVLVVTAWFAHLHFAQPLWIIVFAILGAAVLGTLGLIAGVWAEKFDQLAAFQ
NFLIVPATFLAGVFYSIHSLPPFWQAVSHANPFFYMIDGFRYGFFGVSDVPVATSLGVMV
IALVVVGGIALQMLRTGYKLRH