Protein Info for RPSI07_RS09835 in Ralstonia solanacearum PSI07

Annotation: glucan biosynthesis protein D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 535 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF04349: MdoG" amino acids 39 to 527 (489 residues), 642 bits, see alignment E=3.7e-197

Best Hits

Swiss-Prot: 95% identical to OPGD1_RALSO: Glucans biosynthesis protein D 1 (opgD1) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K03670, periplasmic glucans biosynthesis protein (inferred from 100% identity to rsl:RPSI07_0441)

Predicted SEED Role

"Glucans biosynthesis protein D precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (535 amino acids)

>RPSI07_RS09835 glucan biosynthesis protein D (Ralstonia solanacearum PSI07)
MHRRDLLKQLAAGFLALAPGLTPSATSALPLASAAAEPFDEAWLRQRARALAARPYRKRN
TALPPPLAALGWDAYQSIGARPDHALWAGQRLPFEARFFHLGLFFKSPVRMHEVVDGQSR
VIAYDPAMFDYGKSGLDHASLPANLGFAGFRLTTRADPTRDVAAFLGASYFRAVGGQWQY
GMSARGLAIDTGLRRAEEFPDFTEFWLVRPAPEADTLRVYALLDSPSVAGAYRFDIRPGD
TLVMDVQATLFVRKPIERLGIAPLTSMFLSGENDRTDRAGDRQSAARRWRASDWRPEIHD
SDGLAIWRGSGEWIWRPLANPPALRSQRFADDGPRGFGLLQRDRNPDHYQDDGVFYEKRP
SVWVEPAHGWGEGAVELVELSAADETFDNIVAFWRPAVAPQAGQELAFGYRLSWGGQPPA
APPLARVVATRTGIGGIVGQPRKYFSWRFVVDFAGGELGRLGRTTVEPVIRVSRGRVEIV
SARPLASIDGVRAMFDLVPDAGNAPIELQLTLQSGDRPLSETWAYQWTPPVDRAV