Protein Info for RPSI07_RS09190 in Ralstonia solanacearum PSI07

Annotation: RHS repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 730 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF05593: RHS_repeat" amino acids 259 to 295 (37 residues), 35.2 bits, see alignment 6.3e-13 amino acids 301 to 338 (38 residues), 32.4 bits, see alignment 4.9e-12 amino acids 438 to 475 (38 residues), 33.8 bits, see alignment 1.7e-12 amino acids 600 to 635 (36 residues), 35.5 bits, see alignment (E = 5e-13) amino acids 638 to 661 (24 residues), 23.7 bits, see alignment (E = 2.5e-09) amino acids 646 to 682 (37 residues), 41.5 bits, see alignment 6.7e-15 TIGR01643: YD repeat (two copies)" amino acids 259 to 297 (39 residues), 27.3 bits, see alignment 1.8e-10 amino acids 301 to 341 (41 residues), 27.9 bits, see alignment 1.2e-10 amino acids 600 to 632 (33 residues), 21.4 bits, see alignment (E = 1.4e-08) amino acids 646 to 687 (42 residues), 34.6 bits, see alignment 9.3e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_0286)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (730 amino acids)

>RPSI07_RS09190 RHS repeat protein (Ralstonia solanacearum PSI07)
MLGLGMKRFVEWQIWAAVLGVSLGSSAWAGNVGAGASVGWGYLYCVAGGRTACGNGPDAA
AAAQISGVNSSGAIPECQGACTYALYRTDNGNYYYWYLLPNGSHDGTIAVLYQGGECAPG
YAKQPDGSCQPRPPVQVCSAGSPAIPGTGITTVSEPDEGGSAELPVSLAYRSSSRYGVGA
GGGQWMLSWQRSLDTSQAADPTPQVAVQRDDGSVSTFTPNGTAWSASNTRDTLQPVTDAS
GKTTGWQYTVVDTGAVETYDTSGKLQSVRDRNGRTTTLAYNAANQLTTVAAPSGRSLAVA
YDSQNRVASVTAPDGAVTGYGYNGASILSTVTHPDGTTRQYLYEDGRFPTVLTGIVDENG
SRYATYAYDNQLRTTSSALAGGVNQYQFQYGDNYQTTITDPTGKTSVYSFLQQNGVLLPT
SISAPCGLCGSTRQSSSYDANNNLIQETDYNGTVTTHAYDSQKREIQRVDGAGTTSARTT
TTEWHKLWNLPLRVASPTKLETYSYDSNGNLTSYSETPTADIDGSQGVSAAATGATRTTN
WTYTADGQVATSSGPRTDVGASTTYIYRTADDTAAPPLYRKGDLYQIVDPLGHTTTINQY
DASGRPLQTTDANGTVTAFTYSNRGWLTSQAITPASGTGQTTNYSYDAVGQLTKVTLPDG
SNVSFSYDGAHRMTGAADSQGNSISYTLDAMGNRPQEQAKDPSGNLARQVTRVFDSMNRP
LQITLGTSSK