Protein Info for RPSI07_RS08565 in Ralstonia solanacearum PSI07

Annotation: oligopeptide transporter, OPT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 683 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 203 to 225 (23 residues), see Phobius details amino acids 227 to 254 (28 residues), see Phobius details amino acids 278 to 300 (23 residues), see Phobius details amino acids 328 to 348 (21 residues), see Phobius details amino acids 360 to 384 (25 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details amino acids 468 to 488 (21 residues), see Phobius details amino acids 505 to 525 (21 residues), see Phobius details amino acids 532 to 551 (20 residues), see Phobius details amino acids 563 to 589 (27 residues), see Phobius details amino acids 615 to 637 (23 residues), see Phobius details amino acids 657 to 673 (17 residues), see Phobius details TIGR00728: oligopeptide transporter, OPT superfamily" amino acids 15 to 635 (621 residues), 357.9 bits, see alignment E=1.2e-110 PF03169: OPT" amino acids 17 to 635 (619 residues), 353.9 bits, see alignment E=1e-109 TIGR00733: oligopeptide transporter, OPT family" amino acids 17 to 637 (621 residues), 701.9 bits, see alignment E=6.7e-215

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_0148)

Predicted SEED Role

"oligopeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (683 amino acids)

>RPSI07_RS08565 oligopeptide transporter, OPT family (Ralstonia solanacearum PSI07)
MQSFHPPKPILAAVLPELTLRGMVLGAVITVIFTASNVYLGLKVGLTFSSAIPAAVISMA
VLRAIGGSNILENNMVQTQASAAGTLSSVIFILPGLVMIGHWQGFPFWQTFGVCMAGGML
GVVFTIPLRHAMVVETDLPYPEGVAAAEILRAGSGHAADGSVPDDDAVPAATGLRDIATG
GVVAAVVAFATNGLRVLGEGASWWLAAGASVVRLPLGFSTALLGAGYLIGVVAGLAMLVG
LVIAWGVAVPYLTAITPMPAGKSLSAFGTDVWRTQVRFIGAGVIAVAAVWTLATLIGPVV
RGVKRSFGSLRPQSGDVPRTDQDMAPRWILLVTLAMVVVLVITFAAFLAPATLSPGSRGL
LVACAVLFAVVFGFLVAAACGYMAGLVGSSTSPISGVGIIAITLVSLLLLAVGADRGLLG
SPEASQLGIALAIFTTSAVIAVATISNDNLQDLKTGWLVGATPWRQQVALLIGCVAGAAV
ISPVLELLYNAYGFPGALPRPGMDALQALSAPQATLMTAIATGIFTHQLQWTMVSAGIVI
GIALIAIDWALRQRGGVARLPVLAVGIGIYLPPTVSAPLVVGAVLAWVIDQRLAKRAQAA
GVPFKRYAEVPNRHGVLLASGLIVGESLVGVLMAAVIGASGKDAPLALVGEPFEGTAQWL
GLIVFALVCRAFARRVLAVRPTH