Protein Info for RPSI07_RS08475 in Ralstonia solanacearum PSI07

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 787 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details PF04773: FecR" amino acids 80 to 174 (95 residues), 24.9 bits, see alignment E=2.4e-09 PF20245: DUF6600" amino acids 240 to 358 (119 residues), 93.2 bits, see alignment E=9.7e-31

Best Hits

KEGG orthology group: None (inferred from 95% identity to rsl:RPSI07_0129)

Predicted SEED Role

"putative prolin-rich exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (787 amino acids)

>RPSI07_RS08475 membrane protein (Ralstonia solanacearum PSI07)
MTTSSCRTGRLSGPRLPRVLRAASLAAVLLVCGAQAALAADPASRVARLSDFSGAVSFAP
AGSDDWAAATLNRPFTTGDRLWSDQGSRTELHVGSTALRLGQSTGATLVDLDDRTTQIKL
TQGALSVRVRALPPDQVVEIDTPNLAFQVQEPGEYRLDVAPDGSTTTVTVWRGNGTAYGD
DHSAPLAAGQQVRFGGTDLAEAGGTDYPNRDAFDRWAEARDAREDASASARYVGREMTGY
ETLDEYGTWREEDGYGAVWVPRAVPVGWAPYRTGHWAWVAPWGWTWVDDAPWGFAPFHYG
RWAYVGTTWCWVPGPVVPRPVYAPALVAFVGGGGGGGVSWGINISIGSPGVAWFPLAPGE
AYRPVYAASPTYVTNINRTVVVNNVTVNKTIINNNVTNVTNVNRVTYINANNPAALTAVP
AKTFVNGQPVGPAMTTLRPEQMRAQLTHAQFVSTPALAPVKTSLVGAAAANGPHPLPPAQ
VFSRQALAVRAPQAPAGGHDPLAERFRSQGGALPGAGPAWVGGNAARVAPARGPANAGAQ
PMPAAAQAAGLRLTRATPVGVPRPGNEPGGPRGPNNPAAPGGPGSPQAHGAPSSPAPQAL
MAPAAPGAAARPGQPSGAMPMPERRGEERPATPNAPAQAMHAPPQGPAGTTTRPPRPEGI
PAAPRDERRPMPSAQQERPRNEPPVQVRPEPQSHPAPVPRQPEARVEAPRPMMPQPHPVE
VRPPQPQPQPHVVEMRPPQPQPQPRPEARPPQPPQPQPHVEHHEAAPTQPHPQAGHNEAQ
QHDGERH