Protein Info for RPSI07_RS08035 in Ralstonia solanacearum PSI07

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 PF00561: Abhydrolase_1" amino acids 25 to 172 (148 residues), 39.7 bits, see alignment E=6.8e-14 PF12697: Abhydrolase_6" amino acids 27 to 245 (219 residues), 50.4 bits, see alignment E=7.4e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_0035)

Predicted SEED Role

"benzoate degradation ring-cleavage hydrolase" in subsystem Benzoate transport and degradation cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (259 amino acids)

>RPSI07_RS08035 alpha/beta hydrolase (Ralstonia solanacearum PSI07)
MATFLPGPDHSTLRAQRIDGDPARPALVFLHEGLGCIEMWGDFPQRLCAATGCPGLLYDR
VGYGQSSPMTRPRGLDYLHIAARIELPHVLRALMPDTPYALIGHSDGGSIALIHAADQPA
QLRAAVTEAAHVFVEDASLAGIREADAAFDAGKLAGLARYHGDKTRQTFKAWSETWQRPD
FSDWNIEALLPRIACPLLVMQGEHDQYGTPAQVEAIVRQAGGPATPVLLPGCGHTPHKTH
ADAVLAHMRTFIDALRLPA