Protein Info for RPSI07_RS07590 in Ralstonia solanacearum PSI07

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 852 PF05662: YadA_stalk" amino acids 118 to 161 (44 residues), 34.5 bits, see alignment 3.4e-12 amino acids 206 to 249 (44 residues), 34.5 bits, see alignment 3.3e-12 amino acids 303 to 346 (44 residues), 29.4 bits, see alignment 1.3e-10 amino acids 414 to 458 (45 residues), 38.1 bits, see alignment 2.5e-13 amino acids 538 to 561 (24 residues), 37.6 bits, see alignment (E = 3.5e-13) amino acids 601 to 635 (35 residues), 42.1 bits, see alignment (E = 1.4e-14) amino acids 722 to 745 (24 residues), 32.8 bits, see alignment (E = 1.2e-11) PF05658: YadA_head" amino acids 480 to 506 (27 residues), 21.5 bits, see alignment (E = 3.5e-08) amino acids 650 to 676 (27 residues), 25.1 bits, see alignment (E = 2.7e-09) amino acids 680 to 704 (25 residues), 25.8 bits, see alignment (E = 1.6e-09) PF03895: YadA_anchor" amino acids 794 to 852 (59 residues), 66.3 bits, see alignment 3.2e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp1725)

Predicted SEED Role

"Autotransporter adhesin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (852 amino acids)

>RPSI07_RS07590 hypothetical protein (Ralstonia solanacearum PSI07)
MVCCTMPQSASAEIVLNNDPGVTNCGTVGDAYAWGEGAGSKSCDVGYEAAKKVLDGQVFG
NSLGQLKPGTNILVYSSVARARKNDDVKTLDSMNIGGYLDVWEVAGFHNGVNMNNTGITN
LADGTLSATSTDAVTGKQLNATNTRVTTAEGSISNLQNTVNNIGSSVGLVQQSAAGKDIT
VAKDLDGDVVDFSGKKLSDSTAISRKLTGLADGTLSSTSTDAVTGKQLNATNTRLTTAEG
NLSSNTTSITNLQNTVKNISSGSVGLVQQSAAGKDITVAKDLDGDVVDFSGKKLSDSTAI
SRKLTGLAEGTLSATSTDAVSGKQLYTTNQNLATTNQNLADTNKSLAETNKTVSATTTNI
SNLQNTVNNISSGSVGLVQQSAAGKDITVAKDLDGDVVDFSGKKLSDSTTFSRKLTGLAD
GTLSATSTDAVTGSQLYATNKNVANVSDNVTNIKNTMNTIVNGGGLKYFHANSTLDDAQA
TGLESIAFGGAAVAAGINSMAMGGNARAMAGNAVALGAGSVADRANTVSVGSVGKERQIT
NVAAGTADTDAVNVAQLKAAGIINGNGKANAAVTYGTKADGSTDYGNVTLGGGNASAGTA
IHNVAAGMADTDAVNVRQMTAAIASVQKVSNTSDPMFVADGDRAVKRALAKGTHATAMGA
AASAEGNQSVATGHNAQSGGDSSVAMGANAKATANHAVAMGDGSVADRANTMSVGSAGNE
RQVTNVAAGVQGTDAVNVSQLSQTVYAAVGDLPAGTTAKQYTDEQVGMVRQGINQVARGA
YSGIAAATALTMIPDVDQGKTIAVGIGGASYKGYQAVALGASARIAQNLKAKMGVGYSSE
GTTVGVGASYQW