Protein Info for RPSI07_RS05615 in Ralstonia solanacearum PSI07

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 56 to 74 (19 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 110 to 129 (20 residues), see Phobius details amino acids 149 to 172 (24 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 240 to 263 (24 residues), see Phobius details amino acids 271 to 293 (23 residues), see Phobius details amino acids 313 to 331 (19 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details amino acids 366 to 389 (24 residues), see Phobius details amino acids 399 to 419 (21 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 357 (333 residues), 100 bits, see alignment E=6.8e-33

Best Hits

KEGG orthology group: K02575, MFS transporter, NNP family, nitrate/nitrite transporter (inferred from 100% identity to rsl:RPSI07_mp1249)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>RPSI07_RS05615 MFS transporter (Ralstonia solanacearum PSI07)
MTGKATRIDLFSLRTPQMRAFHLTWLAFFVCFYAWFACAPLMPVLKGEFHLTPGQIANIN
IAAVAVTILVRLIVGPLCDRFGPRKTYTGLLVLGAIPVLGVALAQSYEAFLFFRLAIGAI
GASFVITQYHTSVMFAPNVVGTANAAAAGWGNAGGGVAQGTMPLLLTAIVMLGVTQGLGW
RIAMVVPGVAMLIVAVLYWRYTQDCPEGNFDDLRAAGKTIEGGKKGGWGSFVTAAGNYRV
WLLFITYGACFGVEIFIHNIAATYYVDRFGLSLSAAGMAAASFGLLALFARALGGIVSDR
VARSRGLDARTQLLCVLMLGEGLGLLGFAHAGTASTAVLAMLGFGLFTHMACGATYALVP
FIDRRALGGVAGIIGAGGNAGAVAAGFLMKGLGDAQQTLSMLGVLVGLSAICAVAVRFSA
EHKAREQALYDNTLAASAANV