Protein Info for RPSI07_RS05585 in Ralstonia solanacearum PSI07

Annotation: MATE family efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 52 to 75 (24 residues), see Phobius details amino acids 90 to 112 (23 residues), see Phobius details amino acids 131 to 154 (24 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details amino acids 286 to 309 (24 residues), see Phobius details amino acids 323 to 345 (23 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 388 to 409 (22 residues), see Phobius details amino acids 421 to 442 (22 residues), see Phobius details TIGR00797: MATE efflux family protein" amino acids 19 to 420 (402 residues), 252.3 bits, see alignment E=3.9e-79 PF01554: MatE" amino acids 19 to 178 (160 residues), 118.1 bits, see alignment E=1.6e-38 amino acids 248 to 409 (162 residues), 94.8 bits, see alignment E=2.3e-31

Best Hits

Swiss-Prot: 44% identical to YOEA_BACSU: Probable multidrug resistance protein YoeA (yoeA) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp1243)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (455 amino acids)

>RPSI07_RS05585 MATE family efflux transporter (Ralstonia solanacearum PSI07)
MTAPAARPLWRTFLGLLGPLILANILQSLSGTLNNVYVGHMLGVQALAAVSAFFPVVFFF
IAFIIGLGAGASVLIGQAWGAHKPEAVKTVAGTTLSVGLLAGVAVALLGGPFTHALLGWL
GTPADVLPDAAVYASVMLYAMPGLFVFLLSTAMLRGVGDTRTPLRTLLLSTSIGLVLTPS
LIRGWFGLPQMGVASGAIATIVSLLVALTWLALHLRRRQHPLAPDAMLARHLWIDAGVLK
TVLRIGVPSAVQLVVISIAELALLSLVNRFGSDATAAYGAGTQIISYVQFPAMSIAITAS
ILGAQAIGAGRTDRLDAITRTGLWLNVAISGLLVVLALLFSRVVIGCFTRSVAVMDLAQS
LLHIALWSSVVFGMAGVFAGVMRASGTVLAPTAISVLAIAAVEVPVAWMLCRHIGTNGIW
AAYPVAFITMFVMQGLYYALVWRRRAQRFGIRRMV