Protein Info for RPSI07_RS05175 in Ralstonia solanacearum PSI07

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1070 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 342 to 362 (21 residues), see Phobius details amino acids 369 to 391 (23 residues), see Phobius details amino acids 397 to 419 (23 residues), see Phobius details amino acids 440 to 460 (21 residues), see Phobius details amino acids 472 to 499 (28 residues), see Phobius details amino acids 547 to 565 (19 residues), see Phobius details amino acids 880 to 898 (19 residues), see Phobius details amino acids 905 to 927 (23 residues), see Phobius details amino acids 933 to 956 (24 residues), see Phobius details amino acids 982 to 1002 (21 residues), see Phobius details amino acids 1010 to 1036 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1036 (1034 residues), 1210.5 bits, see alignment E=0 TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 3 to 1049 (1047 residues), 1193 bits, see alignment E=0 PF03176: MMPL" amino acids 321 to 498 (178 residues), 47.9 bits, see alignment E=1.9e-16 amino acids 882 to 1037 (156 residues), 24.2 bits, see alignment E=3.1e-09 PF02460: Patched" amino acids 329 to 497 (169 residues), 24.3 bits, see alignment E=1.9e-09 PF02355: SecD_SecF" amino acids 346 to 498 (153 residues), 28.1 bits, see alignment E=2.7e-10

Best Hits

KEGG orthology group: None (inferred from 79% identity to bac:BamMC406_5229)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1070 amino acids)

>RPSI07_RS05175 multidrug efflux RND transporter permease subunit (Ralstonia solanacearum PSI07)
MNFSKFFVDRPIFAGVLSTLILLIGIISIWRLPISEYPEVVPPSVVVRAQFPGANPKVIA
ETVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTDPDKAQQLVQNRVSQAMPRL
PDVVQRLGVTTVKSSPDLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLARINGVGQVQLF
GSGDYSMRVWLDPNKVAERGLTANEVVRAIRDQNVQVAAGVIGGSPSVPGTDLQLSVNAQ
GRLKTEQEFGDIILKSSPNGAVTTLRDVARIELAASEYGLRSLLDNKQAVAIPIFQAPGS
NALQISDDVRKTMAELKQDFPEGVDYRIVYDPTQFVRSSIEAVTHTLLEAVALVVLVVIL
FLQTWRASIIPLLAVPVSIIGTFGLMLMFGFSINALSLFGLVLAIGIVVDDAIVVVENVE
RNIAEGLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISIST
VISAVNSLTLSPALAALLLKGHDAPKDWLARVMDKSLGWIFHPFNRVFGAASEAYGRSTS
RVIGRKAVMLGVYLALIGLTAVLFNKVPGGFVPMQDKQYLVSFAQLPDGASLDRTEDVIR
RMSDIALKHPGVESAVAFPGLSINGFTNSPSAGIVFVTLKPFDQRKTPDLSGGAIAGQLN
QQYGAIKDAFIAVFPPPPVQGLGTVGGFKMQLEDRGSVGYEQLFAASQAFMQKARQTPEL
GPSFSSYQINVPQLNADLDRVKAKQLGVPVTDVFDTMQIYLGSLYVNDFNRFGRTYQVKV
QADAPFRAHAEDILQLKTRNTDGEMVPLSSLLRVSQGFGPDMVVRYNGYTAADINGGPAP
GYSSGQAQAAAERIAHEVLPKGVRFEWTDLTYQQILAGNSAVWIFPLCVLLVFLVLAAQY
ESLTLPLAVILIVPMSLFAAMLGVWVSRGDNNIFTQIGLVVLVGLACKNAILIVEFAREL
ELQGRSIVAAAIEACRLRLRPILMTSIAFIMGVVPLVVSTGAGAEMRHAMGVAVFAGMLG
VTLFGLFLTPVFYVVLRTLASRRQRSEDAPDLDPDLDADGTALPLPSGQH