Protein Info for RPSI07_RS04850 in Ralstonia solanacearum PSI07

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 531 PF00563: EAL" amino acids 10 to 241 (232 residues), 218.4 bits, see alignment E=2e-68 TIGR00229: PAS domain S-box protein" amino acids 272 to 391 (120 residues), 27.1 bits, see alignment E=1.9e-10 amino acids 393 to 516 (124 residues), 33.6 bits, see alignment E=1.9e-12 PF08448: PAS_4" amino acids 281 to 387 (107 residues), 47.9 bits, see alignment E=2.8e-16 amino acids 406 to 512 (107 residues), 28.9 bits, see alignment E=2.4e-10 PF08447: PAS_3" amino acids 433 to 503 (71 residues), 68.5 bits, see alignment E=9.7e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp1084)

Predicted SEED Role

"contains partial similarity to sensory box/GGDEF family protein(transmembrane protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (531 amino acids)

>RPSI07_RS04850 PAS domain S-box protein (Ralstonia solanacearum PSI07)
MIDAASITRERLLDALARDAIEPAFQCLVDLRDHGLKGFEVLSRWTEADLGEVPPTVFIP
AAERHGLIDTLLVRVLSKACRAAATWGGDFFLAFNLSPLQLQNAALFSLIRAAAESGRFP
LERLQMEITESALVGDMGAAASLVGELKRAGIRIALDDFGIGFSNLERLHAFAFDKIKID
ASFVQNMEDDSDSRKIVASIIGLGQSLGVDVVAEGVETRAQADILRGLGCGLGQGWLFGH
PVPALDAAATLQRRFGEPAAEDALSEASPFQRLHQLEALYRHAPVALCFVDGAERCVSAN
NRFVQILACSGSQFIGRSLAEMACCEARVGGLQMAVRQVAQGMAPAPVEVEGQGETCYLA
FVQSVHDEVGERIGTSIIMIDVTEQRRAERAIRESEEHFRRASDLSPDIAWAARPDGTVN
YMGPTFGAARNMSVEDRIEAWYGIVHPDDRVRVRQEWLAWLPSGQPFETNFRIKWPDGSW
HWVNSRARPHYGADGAIDRWYGLIVDITGRRALERRIAVLERQLDRYSRRA