Protein Info for RPSI07_RS04690 in Ralstonia solanacearum PSI07

Annotation: type III effector

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 PF00646: F-box" amino acids 64 to 98 (35 residues), 19.7 bits, see alignment (E = 1.9e-07) PF13855: LRR_8" amino acids 169 to 227 (59 residues), 29.4 bits, see alignment 1.6e-10 amino acids 360 to 419 (60 residues), 30.1 bits, see alignment 1e-10 amino acids 408 to 467 (60 residues), 29.3 bits, see alignment 1.8e-10 PF13516: LRR_6" amino acids 169 to 188 (20 residues), 14.6 bits, see alignment (E = 8.2e-06) amino acids 191 to 212 (22 residues), 26.8 bits, see alignment (E = 1.1e-09) amino acids 215 to 236 (22 residues), 20.7 bits, see alignment (E = 9.4e-08) amino acids 238 to 260 (23 residues), 14.5 bits, see alignment (E = 9.4e-06) amino acids 286 to 308 (23 residues), 20.3 bits, see alignment (E = 1.3e-07) amino acids 311 to 332 (22 residues), 26.9 bits, see alignment (E = 9.5e-10) amino acids 333 to 356 (24 residues), 23.6 bits, see alignment (E = 1.1e-08) amino acids 358 to 380 (23 residues), 11.3 bits, see alignment (E = 9.8e-05) amino acids 382 to 403 (22 residues), 12.5 bits, see alignment (E = 3.9e-05) amino acids 406 to 425 (20 residues), 14 bits, see alignment (E = 1.3e-05) amino acids 430 to 452 (23 residues), 22.6 bits, see alignment (E = 2.4e-08) amino acids 454 to 469 (16 residues), 15 bits, see alignment (E = 6.2e-06) amino acids 478 to 500 (23 residues), 17.5 bits, see alignment (E = 9.8e-07) amino acids 502 to 524 (23 residues), 25 bits, see alignment (E = 4e-09) amino acids 526 to 548 (23 residues), 18.3 bits, see alignment (E = 5.7e-07) PF13306: LRR_5" amino acids 327 to 417 (91 residues), 15.9 bits, see alignment E=3e-06 amino acids 382 to 465 (84 residues), 11.4 bits, see alignment E=7.2e-05

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp1050)

Predicted SEED Role

"Probable GTPase related to EngC" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (590 amino acids)

>RPSI07_RS04690 type III effector (Ralstonia solanacearum PSI07)
MHRPFPISQYRPVATEDTRPPSAPAEGSTPVNTSRPARTAAGSSVLEDLKSMRLPADSSA
PVADLPDELWMSVARYVDTRTFHRMRTVSKPLRRALESNVKQLTVTTLNGLKALKHPDAY
AALEKLTLSGDVTDDDLKGLPASLKALDLSDCRAQITSEGIAHLSKLPLVRLNVSHNRID
AEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVGNNRIGDRGAQALAANTK
LTSLNASANGIGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNVRLSRLG
DAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMT
LTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIATNMIG
DEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTT
LAALNVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLASLSVVDCRIG
DEGAHALAANTTLALLDVSLNRHIRPDARQALIAVAAHSGMTVKFFGLLD