Protein Info for RPSI07_RS04685 in Ralstonia solanacearum PSI07

Annotation: type III effector

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 629 PF13516: LRR_6" amino acids 166 to 185 (20 residues), 15.7 bits, see alignment (E = 2.6e-06) amino acids 190 to 209 (20 residues), 22 bits, see alignment (E = 2.4e-08) amino acids 211 to 233 (23 residues), 18.1 bits, see alignment (E = 4.3e-07) amino acids 235 to 257 (23 residues), 15.9 bits, see alignment (E = 2.2e-06) amino acids 259 to 281 (23 residues), 22.3 bits, see alignment (E = 2e-08) amino acids 283 to 305 (23 residues), 21.2 bits, see alignment (E = 4.3e-08) amino acids 307 to 329 (23 residues), 23.5 bits, see alignment (E = 8.2e-09) amino acids 330 to 353 (24 residues), 22.6 bits, see alignment (E = 1.6e-08) amino acids 355 to 377 (23 residues), 19.7 bits, see alignment (E = 1.3e-07) amino acids 379 to 401 (23 residues), 28.4 bits, see alignment (E = 2.2e-10) amino acids 402 to 425 (24 residues), 18.8 bits, see alignment (E = 2.5e-07) amino acids 427 to 449 (23 residues), 23.4 bits, see alignment (E = 8.5e-09) amino acids 454 to 473 (20 residues), 16.3 bits, see alignment (E = 1.7e-06) amino acids 475 to 497 (23 residues), 20.6 bits, see alignment (E = 6.6e-08) amino acids 499 to 521 (23 residues), 24.6 bits, see alignment (E = 3.5e-09) amino acids 547 to 569 (23 residues), 25.7 bits, see alignment (E = 1.6e-09) amino acids 571 to 593 (23 residues), 12.1 bits, see alignment (E = 3.5e-05) PF13855: LRR_8" amino acids 212 to 272 (61 residues), 32.7 bits, see alignment 1.1e-11 amino acids 260 to 320 (61 residues), 38.9 bits, see alignment 1.2e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp1048)

Predicted SEED Role

"Probable GTPase related to EngC" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (629 amino acids)

>RPSI07_RS04685 type III effector (Ralstonia solanacearum PSI07)
MGNQFSINRHRPAATRNEHASPPATTQRGTSTNASGQARTPAISWVLQGLKRFGSRPKVA
DLPDELWMSVARYVDTRTFHRMRAVSKPLRRALESNVKQLTVTTLDGLKALKHPGAYAAL
ERLVLAGDFTDRDLEGLPVSLKELNLCGCHARITSRGIAHLSRLPLVSLNVSYNQIDAEG
ARLLAAMPGLTTLDMCSNDIGDEGAQALAASPSLVSLKLGNNRIRDQGAQALATNTRLIS
LDVASNSIGDMGAQALAMSPSLTSLNLASNEIGAAGADALAGNQRLTSLNLSYNQIDAAG
AAALAANAVLVSLDLTKNQIGDGGAQALATNTKLTSLKLGMNGIGPAGAQALAANTTLKS
LELHLNRIGAAGARALAGNRTLTSLNVNGCALGDEGAKALATNATLRSLALHCNAIGVEG
AQALAENTTLTSLDISANQLGAAGAQALATHIALTSLNIRCNGIRTAGARALAANITLAS
LDISENEIGAAGAQALAANITLTSLNVGRNGIRDAGAQALARNAKLTELYASSNQLGVAG
AQALAANTTLTSLTLNNNAIGDEGARALAGNTALISLEVLDCGIGDAGARALAANTTLAF
LRVIYNGAIGQNARLELMASAARRGTTVK