Protein Info for RPSI07_RS03905 in Ralstonia solanacearum PSI07

Annotation: amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 transmembrane" amino acids 16 to 37 (22 residues), see Phobius details amino acids 49 to 71 (23 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 119 to 137 (19 residues), see Phobius details amino acids 157 to 180 (24 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details PF01810: LysE" amino acids 25 to 210 (186 residues), 119 bits, see alignment E=9.6e-39

Best Hits

Swiss-Prot: 41% identical to ARGO_YERE8: Arginine exporter protein ArgO (argO) from Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)

KEGG orthology group: K06895, L-lysine exporter family protein LysE/ArgO (inferred from 100% identity to rsl:RPSI07_mp0868)

Predicted SEED Role

"Arginine exporter protein ArgO"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (216 amino acids)

>RPSI07_RS03905 amino acid transporter (Ralstonia solanacearum PSI07)
MNTALATTSLALSASLQGLALSLGLIVAIGAQNAFVLRQGLRREHVGSVVVFCAMADALL
ITAGVLGMAQALRESPGLARALALAGAAFLAVYGWRALQRARHSSQLKASEGGDSLSRGA
ALAQATAFTLLNPHVYLDTVLLVGSIGAQHPAALRGWFVAGASSASLFWFAILGFGARWL
APWFARPRAWRMLDGLIGMTMLALSALLLRHALKGL