Protein Info for RPSI07_RS03195 in Ralstonia solanacearum PSI07

Annotation: carbamoyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 582 PF02543: Carbam_trans_N" amino acids 5 to 357 (353 residues), 99.5 bits, see alignment E=2.8e-32 PF16861: Carbam_trans_C" amino acids 411 to 580 (170 residues), 227.1 bits, see alignment E=1e-71

Best Hits

KEGG orthology group: K00612, carbamoyltransferase [EC: 2.1.3.-] (inferred from 100% identity to rsl:RPSI07_mp0713)

Predicted SEED Role

"Predicted carbamoyl transferase, NodU family"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.1.3.-

Use Curated BLAST to search for 2.1.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (582 amino acids)

>RPSI07_RS03195 carbamoyltransferase (Ralstonia solanacearum PSI07)
MKYYIGLACTGHENALAIVNSDGEIVFAEATERFLQNKRAVNTPPDDPLRIPRLLKQYCE
PCDAIVVAKTWSTDAPQKMRTDAAHILKALAGADARADRDWIARVAFHAGLGDKLIEPNY
KLAGSGIERYCSLQGLAYSVRSYEHHLTHAAYACYTSPFDDAVCAVFDGYGEGVHSSYFH
YRNGTIEPIPRVRSAKGRYGSLASLGLYYGYTICALLGLDIVNGEEWKVMGLAPYGQLNH
DFLEVLRRHIYVDGLDLVMDENAASTYRELQSYARRSGQSYESVADIAYTAQHYFGELML
EMLTGLRQLGLSDRLVLTGGCALNSTFNGCVAPRSGFEQLYIPPAPSDDGNAVGAALLAY
AEDGGTMPRPAFHSPYLGSAIDDKELEPFLKHGAMLGLVLVPPGDLCDYVAQELAAGKVI
GWIQGCAEFGPRSLGNRSILADPRQASMKERINAIVKFREGFRPFAPSILDEFGDHYFED
YSATPYMEKTLKIRDVYREAIPAVCHVDHTGRLQTVRQDWNPRFHELLRAFHAHTGTPVL
LNTSLNVMGKPIVHSAADAFTVFLSTGLDLLVINDHVFSKRC