Protein Info for RPSI07_RS02495 in Ralstonia solanacearum PSI07

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 60 to 84 (25 residues), see Phobius details amino acids 93 to 110 (18 residues), see Phobius details amino acids 116 to 138 (23 residues), see Phobius details amino acids 150 to 171 (22 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 224 to 247 (24 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 314 to 336 (23 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details amino acids 377 to 397 (21 residues), see Phobius details PF07690: MFS_1" amino acids 42 to 363 (322 residues), 76.4 bits, see alignment E=1.1e-25

Best Hits

Swiss-Prot: 36% identical to YYCB_BACSU: Uncharacterized transporter YycB (yycB) from Bacillus subtilis (strain 168)

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 100% identity to rsl:RPSI07_mp0565)

MetaCyc: 37% identical to 2-nitroimidazole exporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-273; TRANS-RXN0-596

Predicted SEED Role

"MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>RPSI07_RS02495 MFS transporter (Ralstonia solanacearum PSI07)
MPRQPQPTPSTLHDTAGRRSTGALVMLVAGLVLVGMNLRPALSSLSPVLKQVAAGTGLSG
ATAGLLTTLPVVCLGVFAPAAAVLARRFGAERAVGGLLIALAAGIALRSAGGIVPLFAGT
LAAGACIGVTGILLPGIVKRDFGRQADLMTGVYTMALCLGAAVAAGASAPLSALLGGWQP
ALAFWALPALLAFAGWWPHMRHPHAGGAAARIERVALWNRPIAWQVMLYMGLQSSLAYCV
FGWMPVILQDRGLSAVQSGMVVAVSVLLQLITALGGPFIARLGRDQRPAVLLMMLMSWAG
LMGCLYAPVSTLWWWAVLLGLGQGGNFSVALSLIVLRSADARVAGSLSAMTQGGGYTLAA
AGPYLMGVLHDLTGGWAAMGWLFSAIALGALGSGVLAGRNRTLHADS