Protein Info for RPSI07_RS01435 in Ralstonia solanacearum PSI07

Annotation: flagellar hook-associated protein FlgK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 642 TIGR02492: flagellar hook-associated protein FlgK" amino acids 4 to 350 (347 residues), 272.1 bits, see alignment E=5.8e-85 PF00460: Flg_bb_rod" amino acids 6 to 35 (30 residues), 27.1 bits, see alignment (E = 6.5e-10) PF22638: FlgK_D1" amino acids 94 to 328 (235 residues), 254.3 bits, see alignment E=2.3e-79 PF21158: flgK_1st_1" amino acids 338 to 413 (76 residues), 38.7 bits, see alignment E=1.7e-13 PF06429: Flg_bbr_C" amino acids 599 to 638 (40 residues), 45.4 bits, see alignment 9.4e-16

Best Hits

KEGG orthology group: K02396, flagellar hook-associated protein 1 FlgK (inferred from 100% identity to rsl:RPSI07_mp0325)

Predicted SEED Role

"Flagellar hook-associated protein FlgK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (642 amino acids)

>RPSI07_RS01435 flagellar hook-associated protein FlgK (Ralstonia solanacearum PSI07)
MSSSLLNIGATGLRVADINLQVTGNNIANASTPGYSRQEAVQTENTPMATGAGYLGQGVN
VTTVKRIYDQFLTAQVQSGQASTSAADQLNSLVSGLDSYLSDSNSGLGSALTGFFNAADS
LASNPSSTSARQVFLSAASTLQTRFNAVAGQMNSLSTQVNTQVQTQVNSVNSTAQQIAAL
NDQIAKAEAASGGQPANDLRDQRDQLVQTLNQSIKTSVVQTGDGQYNIYVGNGQALVQGN
QSYQLTTVASQYDPTQLSVGYKSPAGTVTIDDSQLGGGALGGLMQFRQNTLIPAQNSLGR
LAAAITADVNTQNKEGMDLNGKLGTDLFSAAGPSVAASSSNTGTGSLTATITNANAGQGY
DYQVKYSGGAYTVSHYPDGSGAVTVSSWPTTIDGVTLNLTGAMNSGDSFLVRPTANAAST
MQTLTTDYHAVAAASPVVVNQGSNNTGSTSVASIGVDSTYAGSPLASAINLTYSGGSLSG
FPGNVTVTVNGTSTTYSGTAPYTQGATYSFNGIQMSLTGTPASNDTFTVSANTANSTDGH
NASAFAQLRNATVLDGGTTSLGSAWTNLVTQVGIQASQASANLTSQKALLASSTSQQQSV
SGVNLDDEAMNLMKYQQAYQASAKVMQTANSLFDSLLSIANG