Protein Info for RPSI07_RS01205 in Ralstonia solanacearum PSI07

Annotation: poly-beta-1,6 N-acetyl-D-glucosamine synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 285 to 293 (9 residues), see Phobius details amino acids 303 to 330 (28 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details amino acids 379 to 402 (24 residues), see Phobius details TIGR03937: poly-beta-1,6 N-acetyl-D-glucosamine synthase" amino acids 12 to 417 (406 residues), 592.6 bits, see alignment E=2e-182 PF13641: Glyco_tranf_2_3" amino acids 56 to 279 (224 residues), 105.4 bits, see alignment E=1.1e-33 PF00535: Glycos_transf_2" amino acids 59 to 226 (168 residues), 107.4 bits, see alignment E=1.9e-34 PF13506: Glyco_transf_21" amino acids 124 to 279 (156 residues), 46.4 bits, see alignment E=8.5e-16 PF13632: Glyco_trans_2_3" amino acids 139 to 347 (209 residues), 86.6 bits, see alignment E=5.5e-28

Best Hits

KEGG orthology group: K11936, biofilm PGA synthesis N-glycosyltransferase PgaC [EC: 2.4.-.-] (inferred from 100% identity to rsl:RPSI07_mp0275)

Predicted SEED Role

"Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-)" (EC 2.4.-.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.-.-

Use Curated BLAST to search for 2.4.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>RPSI07_RS01205 poly-beta-1,6 N-acetyl-D-glucosamine synthase (Ralstonia solanacearum PSI07)
MDLLLVKRWISGFVFYYPFFMSYFWMIGGLLHFFLLERGTQGVRYPLALLGVKVYPKVSI
IVPCYNEEANVREVISHLARMRYPNYDIIAVNDGSSDRTGERLNELAARYPQLVVIHQSS
NQGKAIGLTTAAQVTDAEYLMCIDGDSILDVDAIAWMIRHLLENPTLGAVTGNPRIRTRS
TLLGRMQVGEFSSIVGLIKRTQQVYGRLLTVSGVVVMFRKHALEEVGYWSNDMLTEDIDI
SWKLQVGGWIIRYEPRALSWILMPETFRGLYKQRLRWAKGGIQALIKYAPAMLSLRQSMM
WPIFFEYALSVVWAYNMLFVIAWSVLGFFIDMPPEWRFEAFPRWHGTLLFITCVLQLLVG
CYIDRRYDDGILRYFIDTVWYPVAFWILNLITTVVGFPAVAFQRERARARWTSPDRGIQQ
GNPP