Protein Info for RPSI07_RS01160 in Ralstonia solanacearum PSI07

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 PF13428: TPR_14" amino acids 88 to 131 (44 residues), 24 bits, see alignment 3.1e-08 PF07719: TPR_2" amino acids 89 to 120 (32 residues), 25.9 bits, see alignment (E = 5e-09) PF00515: TPR_1" amino acids 89 to 120 (32 residues), 29.1 bits, see alignment (E = 4.3e-10) PF13181: TPR_8" amino acids 90 to 120 (31 residues), 24.9 bits, see alignment (E = 1.1e-08) amino acids 123 to 149 (27 residues), 12.5 bits, see alignment (E = 0.0001) amino acids 158 to 188 (31 residues), 14.4 bits, see alignment (E = 2.5e-05) amino acids 190 to 216 (27 residues), 12.9 bits, see alignment (E = 7.4e-05) PF13432: TPR_16" amino acids 93 to 155 (63 residues), 42.1 bits, see alignment E=7e-14 amino acids 169 to 223 (55 residues), 26.6 bits, see alignment 5e-09 PF13414: TPR_11" amino acids 95 to 133 (39 residues), 39.5 bits, see alignment 2.5e-13 amino acids 168 to 200 (33 residues), 27.8 bits, see alignment (E = 1.2e-09) PF13431: TPR_17" amino acids 110 to 142 (33 residues), 33.1 bits, see alignment (E = 2.6e-11) PF13176: TPR_7" amino acids 124 to 153 (30 residues), 17.8 bits, see alignment (E = 1.9e-06) PF13844: Glyco_transf_41" amino acids 304 to 461 (158 residues), 133.2 bits, see alignment E=6.6e-42 amino acids 471 to 654 (184 residues), 166 bits, see alignment E=7.3e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp0265)

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (675 amino acids)

>RPSI07_RS01160 tetratricopeptide repeat protein (Ralstonia solanacearum PSI07)
MTTNSSRTTQNTPPRAGSSKTQSALPFLQMLLGSGRFKEAFLAAASISQQESNPVILNIA
AIAAREANDLASADLYWSRCIEQFPQDGNAYINRGNLLAESGDAEQAEHAYLKAIELNPD
TPDAWYNLGNLYSRSRQYQAALGPYREALKRVAGRPDLHNSMGCACSELGLTDEALQHLQ
RAVQLAPRYAEAWLNLGLLHRDTRQLKAAVDALQHAAIPGDPSEAQALSELAMVQMSMCD
WAAAARSEARLLGLLRAGRATGVAPFVTLALPNCTASDQRMAAAQATRQAAPAITPVTGD
PAPRSPGRIRVGYLSADFHAHATAYLLAGVLEHRDASRFETFLYSYGPQTDDDMQRRLRA
ACEHFVHIAPLSDGQAAQRIASDDLDLLIDLKGFTKHARLDIGAMRPAPVLVNWLGYPGT
LGSKRLADYLIGDPVVTPVSQQAQFEETLALMPHCYQPTDRRRETLPPPDRADVGLPADG
FVFCCFNQAYKITEARANTWFTILSRTPGSVLWLLEPDASAKAALLESARRHGVESHRLV
FAPQVAQREHIARLQLADLALDTFPYTSHTTASDLLWAGVPLLTRMGDTMASRVAASILQ
AAGLHDLVVTTEEDYVDAAVRLAGDAQALASVRLHAQAARNTPLFDTRTFARDLETLFGR
IVERSADTMPDPIVL