Protein Info for RPSI07_RS01130 in Ralstonia solanacearum PSI07

Annotation: APC family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 transmembrane" amino acids 28 to 40 (13 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 134 to 160 (27 residues), see Phobius details amino acids 169 to 192 (24 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details amino acids 314 to 336 (23 residues), see Phobius details amino acids 362 to 382 (21 residues), see Phobius details amino acids 388 to 413 (26 residues), see Phobius details amino acids 425 to 445 (21 residues), see Phobius details amino acids 451 to 469 (19 residues), see Phobius details PF13520: AA_permease_2" amino acids 63 to 443 (381 residues), 37.4 bits, see alignment E=7.7e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp0259)

Predicted SEED Role

"Amino acid transporters"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (657 amino acids)

>RPSI07_RS01130 APC family permease (Ralstonia solanacearum PSI07)
MATIGRMWQLIVGKPLDPLDPRTRHAIAVSPLLAWVGLGADGLSSSCYGPEEAFLALGQH
TPLALFLALATAATVFIIALGYNQVIELFPTGGGGYRVATALLGSRPGLVSGAALLVDYV
LTVATSLASGVDAFFSLLPVGAQAFKLTTELTLVVLMTGLNFRGMRESILVLLPIFLGFV
VLHLGLIVYGVAVHGSALATVVPAAVGEAHTMSRTLGPLVMLALLMRAFSLGGGTYTGLE
AVSNNVNMLAEPRVPNGKWTMLYMATSLAFTAGGIILLYMLWHARPVEGQTLNAVVFGSI
IDHLGLGAPFARNALLAAVLAFEAGLLLVGAQTGFLDGPAVLSNMAHDSWVPRHFRDLSA
RLVRQNGIIVMGAASLVILLWTHGEVAVLVVLYSINVFLTFSLSLLGLCTYWWRRRHGDE
RWWKHFALSAWGLSVTSTVLVITLVEKFTAGGWLTVLVTSAVVVLCFLIRRHYDATRALI
AKEDALFASAPPEVNATDAPDKPDPSQPTAILLVGKHRGASMHALLWVHRLFPGHFKNVI
FLAVGEVDAQSYDGAEHLDQLRQSITAALTYYVAFCRRHGTAADYRIAFGTHPVGEFTRL
AEATMAEFPDSVCFASKLIFKQVNFLTAWLHNQTPLEIQTRLHMQGKQMVLLPMNVG