Protein Info for RPSI07_RS00505 in Ralstonia solanacearum PSI07

Annotation: non-ribosomal peptide synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2800 2992 transmembrane" amino acids 857 to 874 (18 residues), see Phobius details amino acids 1132 to 1149 (18 residues), see Phobius details amino acids 1812 to 1831 (20 residues), see Phobius details amino acids 1933 to 1950 (18 residues), see Phobius details PF00501: AMP-binding" amino acids 30 to 368 (339 residues), 300.9 bits, see alignment E=3.1e-93 amino acids 1077 to 1437 (361 residues), 309.2 bits, see alignment E=9.2e-96 amino acids 2154 to 2504 (351 residues), 297.7 bits, see alignment E=3e-92 TIGR01733: amino acid adenylation domain" amino acids 51 to 442 (392 residues), 450.7 bits, see alignment E=1.1e-138 amino acids 1099 to 1511 (413 residues), 460.8 bits, see alignment E=9.7e-142 amino acids 2175 to 2579 (405 residues), 446.8 bits, see alignment E=1.6e-137 PF13193: AMP-binding_C" amino acids 426 to 501 (76 residues), 52.8 bits, see alignment (E = 1.6e-17) amino acids 1495 to 1570 (76 residues), 47 bits, see alignment (E = 1e-15) amino acids 2563 to 2638 (76 residues), 52.5 bits, see alignment (E = 1.9e-17) PF00550: PP-binding" amino acids 530 to 593 (64 residues), 53.1 bits, see alignment (E = 7.6e-18) amino acids 1599 to 1661 (63 residues), 50.9 bits, see alignment (E = 3.7e-17) amino acids 2665 to 2728 (64 residues), 63.2 bits, see alignment (E = 5.6e-21) PF00668: Condensation" amino acids 612 to 1058 (447 residues), 349.9 bits, see alignment E=5.4e-108 amino acids 1683 to 2133 (451 residues), 349 bits, see alignment E=1e-107 PF00975: Thioesterase" amino acids 2750 to 2976 (227 residues), 94.5 bits, see alignment 2.9e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2992 amino acids)

>RPSI07_RS00505 non-ribosomal peptide synthetase (Ralstonia solanacearum PSI07)
MFVADDTPLLQGTDNAARQPMTEPSIPALFEQQVARAPEAIAVTFGEARLSYAELNERAN
RLAHQLLALGVQPEDRVAVALHRCIDLPVAMLAIFKAGAVYLPIDPNYPAERIAFMLDDA
RPALLLTASAARAGLPANAPQPLCLDELALDGLPLHNPALPIAPQHAAYLIYTSGSTGRP
KGVLVSHRGVPHLVSTHMRRCELGPGCRVLQFASPSFDAALSELLRPLLSGATSVMASPD
DLLPGTPLASLLLRERITHVTLPPAVLAVMPEDSLASVRYLIVAGEAVSPALVERWHHGR
RMINAYGPTEATVLASMSAPMAGADDLSIGTPIDNAQIHLLDAMLQPVPIGAAGEICIGG
PGVARGYLNRPGLTAERFVADPFGPPGARLYRSGDLGRWRHDGTLEFLGRIDEQVKIRGF
RIEPGEVQAVLEQHPDVAQATVIAREDQPGNRQLVGYVVAADNAQPAPAALRRYLAERLP
DYMVPAAVVRLDALPLTPNGKIDRKALPAPEAGAYASKAHEAPQDGTETELARIWGEILK
RARVGRTDHFFELGGHSLLAVRTVTGMRQAFGVDIAVRDLFAYPVLKDLAEHIQRAARVD
RPVISKAERGAQVPMSFAQRALWFLAQIDGISQVHLVPIGVQLRGNLDRPALRRALDRIL
ARHEALRTTFALVDGQPVQRIMPAHEAHFALAETDLRQHGHPHDALERLIALECDTPFDL
GTGPAIRGRLIRQAEEAHTLLVTMHHVVTDGWSVGVFLRELGTLYNAFSQAQDDPLPALE
LQYADYSLWQQRWMESDALQRQAAYWKTMLADAPEQLELPTDHPRPLRRSYAGALLGVTL
DETLTAGLKALSNRHGTTLFMTLLTGWAVLLSRLSRQRDVVIGTAVANRGHAEIEPLIGF
FANMLALRVDLDHAPTVGQLLRQVKARAIAAQQHEDMPFEHVVELTRPVRSLARNPLFQV
VFVWQNTPEERLTLTGLTATPLRLDTRTTAKFDLTLALQETGDRISGGIEYATSLFEPDT
VERFAGYLRTLLQAMVDDDTRPVDRLPMLPPAERQRLLAGPDAAAHAGSEATLPQLFEQQ
AAQTPDAIAVVFEAQTLAYAELNRRANRLAHDLIAQGIGPGQFVAIALPRGLDLLVALLA
VLKSGAAYLPLDPDYPQDRLAFMIDDAKPARVITHAAVAGRLPGSAPQLMLDAPQTQARL
SRMPDVDPTDSHRLRPLLPSHPVYVIYTSGSTGRPKGVVIEHRNVVRLLRVTEHPFHFGP
SDVWTLFHSFAFDFSVWEIWGALAYGGRLVVVPALCARSPGEFYALLCREGVTVLNQTPS
AFQQLIAAQARSDETHRLRCIVFGGEALELHTLLPWIQRNDPERTRLINMYGITEITVHA
TFCPIERADIEAGAGSRIGTPLADLRIHLLDEALEPVPVGVLGELYIGGPGLARGYLNRP
ALTAERFIANPFGTPGTRLYKTGDVGRWLPDGTFEFLGRNDDQVKIRGFRIELGEIEAKL
AAQPGVRDAVVLAREDQAGDKRLVAYLVPEAGDALHAATLRDGLARELADYMLPSAYVML
DALPLTVNGKLDRKALPAPQGDAYIRRGHEAPQGAMETALAAIWSAVLQRELIGRHDNFF
ELGGHSLLAVRLLSQIRDALQLEMPLGTLFSHPSLSGFAAAAGQTGRTTVTAIPPADRSV
PLALSFAQQRLWFLAQMEGTRVSEAYHIPGGFRLEGTLDQAALAASLDRIVARHEALRTT
FGEHDGVAVQVIAPPDTGLALQTHDLSGIDGPLAREAQLRQHLAQAARTPFDLERGPLVR
ASLFRLAPQAHVLFFCLHHIVFDGWSMGVLMHELSVLYAALREARADGHDPLPPLPIQYP
DYAQWQRRWIGGERQRHQAGYWQQALAGIPSVIALPTDRPRPPRQDYAGAHCPVTLDATL
SSRLGALSQRHGVTLYMTLMAAWATLLSRLSGQHDIVIGSPTAGRTRSETEHLIGFFVNT
LALRYRLAPGQTVAGLLAYSRQQVLAAQQHADLPFEQIVDLVQPPRSLAHAPIFQVLFAW
QNVPPGRLALPELTASPLKGPGSVSAKFDLTLTLQEADGRIAGTLEYATALYDHATVERY
IDHWRTLLEAMADDDSRPLADLPLLTPAQRQQVLVDWNATQAPYPRHACLHQYFEAQVER
TPDAIAVVHEARQLTYAQLNTQANRLAHRLIALGVRPDARVALCVERGVEMVVGLLGILK
AGGAYVPLDPSHPPARLAAMVEDCAPAAVVVQEASLPGLSAQGLPVVVLDGADTAQGPQA
GNPDAKAIGLASHHLAYVMYTSGSTGLPKGVMVEHRSVMNLWQALEQTVYAEGRHCTRVA
LNAAISFDASVQALVQLLSGRCLVIVPQAVRLDAAALSAFLKAQRIDVFDCTPAQLDLLV
ADGCFHDAQGLPQAILVGGDAMAASTWDTLSRTAGVRVYNVYGPTECTVDATLCALHGQA
GRPSIGRPLANTWVYLLDERQQPVPVGVAGELCIGGAGVARGYLNRPELSAERFLPDPFS
REAGARMYRTGDLGRWLPDGRIEYLGRNDHQVKIRGFRIEPGEIQAVLEQHPDVVQAAVI
AHEDAAGGKQLVGYAVAAGAARPESAALRRYLAEHLPDYMVPAAVVRLDALPLTANGKID
RKALPAPDFAAHASVREPLTPNEHALAALFAEALGLDKVGVDDSFFDLGGHSLLATRLVS
RIRAELDVALPVRALFEAPSVAQLARRLNADEAAGDLDTVLPLRATGSKRPLFCVHTATG
LGWPYAGLVAHVGREVPVYALQSPFLDAGVPLHDDIGAVVDRYIAALRAVQPQGPYRLLG
WSIGGVIAHRIATRLEQLGHAVELLALLDSHPAQRTQAQPLTDAQLLRRFLGIIGWPAGE
DEVATDCPLDTLARIHAQHDRLSVLTLAQIHRLFDVFKHHLRLWREPDLGRVHGRTVFFE
ATRTVPRPDPLHALWTPHVASAMTVHGIPCTHDDMARPACLATIGQRLKDAL