Protein Info for RPSI07_RS00160 in Ralstonia solanacearum PSI07

Annotation: efflux RND transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details PF00529: CusB_dom_1" amino acids 62 to 306 (245 residues), 26.7 bits, see alignment E=8.8e-10 TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 68 to 382 (315 residues), 146.6 bits, see alignment E=4.3e-47 PF16576: HlyD_D23" amino acids 80 to 317 (238 residues), 169.1 bits, see alignment E=1.7e-53 PF13437: HlyD_3" amino acids 213 to 315 (103 residues), 59.8 bits, see alignment E=8e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp0036)

Predicted SEED Role

"Probable Co/Zn/Cd efflux system membrane fusion protein" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>RPSI07_RS00160 efflux RND transporter periplasmic adaptor subunit (Ralstonia solanacearum PSI07)
MQVDFKSAAIGGMVAALAVGGLMWGLGGQRRSEAAPSSYEAPPSAVPAAPSRDGQSVTLS
PTQLQYIKVAPVELRDFANRREAIGNIDFNQDRAVQVFSSYAGKIRNVYAKVGDTVAKGK
PLFDIESPDLVQAESTLISTAGTRKLTTTALARARQLFEIQGLSQKDLDQATSDQQAAEA
AYKAAREAVAIFGKTPAQMDQIIETRRTDPVLTVTSPIAGQVTARAAQPGLLVQPGNAAP
FTVADVSTMWMQAFVPEADVPLLHVGQPVKIRVMAFPNRVFTGKVTTIGASVDANTHRIL
VRSEIEDPKHELRPGMFTSFDITTGNPIHSPALATDGVVREGDGTMTAWVTTDRKRFARR
VIKLGLEQDGFVQIVDGLAAGELAANEGALYLSTAAAGSFNGSD