Protein Info for RPSI07_RS00060 in Ralstonia solanacearum PSI07

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 895 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 282 to 303 (22 residues), see Phobius details PF02743: dCache_1" amino acids 38 to 204 (167 residues), 63.1 bits, see alignment E=1.2e-20 TIGR00229: PAS domain S-box protein" amino acids 354 to 474 (121 residues), 39.6 bits, see alignment E=5.3e-14 amino acids 477 to 598 (122 residues), 37 bits, see alignment E=3.3e-13 amino acids 600 to 720 (121 residues), 29.1 bits, see alignment E=9.1e-11 PF00989: PAS" amino acids 356 to 465 (110 residues), 28.3 bits, see alignment E=6.1e-10 amino acids 480 to 588 (109 residues), 25.7 bits, see alignment E=3.9e-09 amino acids 605 to 712 (108 residues), 23.8 bits, see alignment E=1.5e-08 PF13188: PAS_8" amino acids 359 to 410 (52 residues), 24.6 bits, see alignment 7.1e-09 amino acids 604 to 652 (49 residues), 16.5 bits, see alignment 2.6e-06 PF08448: PAS_4" amino acids 362 to 470 (109 residues), 45.3 bits, see alignment E=3.8e-15 amino acids 482 to 592 (111 residues), 29.1 bits, see alignment E=4e-10 amino acids 610 to 716 (107 residues), 71.7 bits, see alignment E=2.4e-23 PF13426: PAS_9" amino acids 369 to 466 (98 residues), 24.2 bits, see alignment E=1.4e-08 amino acids 489 to 590 (102 residues), 19.3 bits, see alignment E=4.5e-07 PF08447: PAS_3" amino acids 378 to 460 (83 residues), 32.4 bits, see alignment E=3.7e-11 PF13596: PAS_10" amino acids 608 to 713 (106 residues), 29.9 bits, see alignment E=3e-10 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 723 to 882 (160 residues), 128.7 bits, see alignment E=1.8e-41 PF00990: GGDEF" amino acids 727 to 878 (152 residues), 134.9 bits, see alignment E=9.4e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to rsl:RPSI07_mp0013)

Predicted SEED Role

"FIG00974280: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (895 amino acids)

>RPSI07_RS00060 PAS domain S-box protein (Ralstonia solanacearum PSI07)
MKLTLKSQAAIMATAISVAVVSLFGWSQREPIRREVMRQIKTQQTALVRESADDLRQRLD
TYLGLLERTARQMTTVRFDSPAQEAAFYASIAPTAGLFDSVFLASADGKVTAVSPHREGV
VGIDIADRDYFKQVMVVDQPTISAPLRNRVGDEPVVTFAAPVHDRDGRIVGLIGAGLYLL
KPNFLGDLRDMRIGETGRVYLVARGSKPVFILHPVADKMLAPLDADPEIAAAFHADPAAL
PDPGGDVVTTQDVIATGWTLAAVLPGAEANRQLNAMRERFRWSLLALAALIGVSVWAAML
WLLRPLGQLHAAMTQLSATDLREIRPAELPGASAEIEAVSTAFRKLMDEVTRQRAELEAV
NDASPLGLFRCDAAGHMVYANQACRRLLGLTLEEAMTGTWLARLHPQDREAVTAGWADAV
TRGVGHCAELRVIVPGRDERLLVVNTAPVRVEGQVVGHVGAMEDITVRARAEQASRVLTQ
ILDSTTDFVAQTDVQGRVTYINPAGRRFAGVALDADVRDRRAETFYPDDTMQWLREVAVP
TAARDGVWIGETTVFDAQRRAVPINHMVIVHRDPMGRVEYFSSIMRDITQDKAAKEALQR
SRETLQTVTDAMPALVAFVDADERFRFLNAAYEKVFDRPTAAMLGLTVHEVLGEEAYAAM
RGPLQRALAGETVVFEREAPDRDPYRCDEITYIPQFDARGRVAGVHAVMLDITERKKQEL
HLRALSTTDHLTGLLNRAGFEARLSAALAQARGDGTVGALLLLDLDGFKVVNDTHGHAVG
DALLRRFAQRLARTVRPCDGVARFGGDEFAVILAQPDDARAVARHILAACDRPFRLGEAV
VRVGASIGIAGFDAGTLAQSAVFEAADEALYEAKSRGKGLFVAFDELSAGSSRTA