Protein Info for QEN71_RS43920 in Paraburkholderia sabiae LMG 24235

Annotation: SNF2-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1039 transmembrane" amino acids 541 to 558 (18 residues), see Phobius details PF13649: Methyltransf_25" amino acids 71 to 147 (77 residues), 27.2 bits, see alignment 8e-10 PF00176: SNF2-rel_dom" amino acids 525 to 676 (152 residues), 40.4 bits, see alignment E=2.9e-14 PF00271: Helicase_C" amino acids 858 to 959 (102 residues), 34 bits, see alignment E=4.8e-12

Best Hits

KEGG orthology group: None (inferred from 74% identity to bge:BC1002_7250)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1039 amino acids)

>QEN71_RS43920 SNF2-related protein (Paraburkholderia sabiae LMG 24235)
MQRDLFSFEADWYAPLRTILSLGSQAAPVAHQGELAAARRLHLGQFFTPDAIAAFMWSFV
SGWKLNRRIRVLDNSVGSGRLLQFADPERHAVYGVDVHADVIARCQKVFEDAGFECEFKL
AGMEDIQPVSFDLAIINPPFSIHLESPHLKPLACTTWGRYGANTSALSHDYAVHQALDAA
DIVVALLPITTAEAMIAGEQGDGLRRRAAGLFELPADAFRSEGANVRTAVVVFDRYRDRP
SDFVRDVVSDLGAPAPNLKLHFDDRGFGQPRLRFQKLDDSVPVITRPVTGDKSVVISHDG
RRIRLRFACGFNEAMVLNSVYVDRIYSRDGHRLPRGFRYAGQGLLDLETYLMQDDPRAAL
DGLLDRIRGVGGEPQFGPGFLKHFVRRARRSVRQATPLRHVAWTTGAGSSDHVSGTARET
HKVDASLWASPLVKAGDTVSFDREGDGRYRYVLKGATYYLSVDELNARFAIDNVSEGWEV
VHEGLSVRFPEQAAAIRSMVEVLGIDQWLDWGFQTDDLIETLLKPSGCVIAWEQGCGKSR
LTIALILLSGVMHGLIVVESRLIDEMMTEIATLPISMDDVKVITCGADLNDLRRFNLISY
ERLRMPVDKAVSTRVTYAHRLRRRIGLLVADEGERLANPTSDQSRALWQLSARRRYVLTG
SPIPNYPRDAFGLIAFSGGDGTAAQPYGYRRGYLEENWINTVEYAMRGVDRFRDDFVVLE
WVTWQFAESLQEGAKREVPKIGNLHGYRAMLAPHIKRRLVAEPEVAKYIRIDPPEFEVET
VDWDRGHLASYLRAADEFADWYRSSRDDRKACNLVTILARIRAVHFAANYPQYGMEGVDR
IGGLTSKQRAVISRMREIAAEGKQAIVFAENPGVLDLLARELKSHGVESVPFHGEIPIKR
RVADKDKRFLTGLATGLMATKASGRAGYNLPNADYILFYDRSWTWRIEYQAMRRALRWNR
KGTLKVLYFHLPGSIDEYQDQMVAHKRDATQAGLDWATPELEDETFLHMDSLLDRFVDDL
ALLSDRTGSDMRKLLKEAA