Protein Info for QEN71_RS42915 in Paraburkholderia sabiae LMG 24235

Annotation: IS4 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 transmembrane" amino acids 371 to 392 (22 residues), see Phobius details PF14706: Tnp_DNA_bind" amino acids 11 to 68 (58 residues), 83.4 bits, see alignment 1.2e-27 PF01609: DDE_Tnp_1" amino acids 230 to 377 (148 residues), 25.7 bits, see alignment E=1.4e-09 PF02281: Dimer_Tnp_Tn5" amino acids 381 to 463 (83 residues), 28.5 bits, see alignment E=2.3e-10

Best Hits

KEGG orthology group: None (inferred from 94% identity to rcu:RCOM_1950980)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (477 amino acids)

>QEN71_RS42915 IS4 family transposase (Paraburkholderia sabiae LMG 24235)
MAGKRHADDRSWFDLEVQGSEFQDTRLRRRFASLLEKLWDGMGQTIPFACQDWASTKAAY
RFLSNDRVSEHDILSGHFQASAERVKATDGPVLILQDTTAFSYQRERPELIGYTGKTTLR
TGKNGRGPRRPLTQCGILMHSSLAVTADGLPLGLAAVKFWTRKQFKGASELKRHINPTRV
PIEEKESWRWLENMRQSTELLDDPVRCIHIGDRESDIYELFCTAYDLSTYFLVRTCVDRL
AGDGQHTISKAMRQVQVKGLHRVELRDAKGRPMTATLELRYAPMTVLPPIGKQSRYPALQ
LTVLHAQERDPPPGRAPIEWKLITNLPVRSRAEAIEKLDWYAMRWKIETFHKILKSGCKA
EESRLRTADRLTNLIAVFCILSWRIFWITMLGRSAPRAAAELAFTRTEIDLLEHVVQDTS
HNAQAPPLVRNVIRLAQLGGYLARASDPPPGNTVMWRGMRRLTDIQIGYELALKRSG