Protein Info for QEN71_RS42515 in Paraburkholderia sabiae LMG 24235

Annotation: fatty acid desaturase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 transmembrane" amino acids 45 to 71 (27 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 153 to 171 (19 residues), see Phobius details amino acids 192 to 214 (23 residues), see Phobius details amino acids 221 to 240 (20 residues), see Phobius details PF00487: FA_desaturase" amino acids 59 to 304 (246 residues), 124 bits, see alignment E=4.7e-40

Best Hits

KEGG orthology group: None (inferred from 95% identity to bph:Bphy_7780)

MetaCyc: 67% identical to dihydrorhizobitoxine desaturase (Bradyrhizobium elkanii)
RXN-18802 [EC: 1.14.19.61]

Predicted SEED Role

"putative RtxC homolog"

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.14.19.61

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (353 amino acids)

>QEN71_RS42515 fatty acid desaturase family protein (Paraburkholderia sabiae LMG 24235)
MENCEAWQLRGKRFRTSRFSRDITRELSELKPDNITGALYILKDYLVILACAYATVRITW
WLYPIVVLIIGAQQRGLTTIAHDAAHRTLAKNTRWNYFLGIVFAAYPLLQRHWAYRYSHV
HLHHPHLGDPEKDPDLKFFISSGVYDVRHPRKYAFSVIWKVMLGGATLRYLKYLWNNRFL
ISREGQKDIDRLGSAIDTYGFALFWLVVILGFIQAKSVDMLVLFWLVPYLTTFQALGWFI
ELAEHSPMCETETDDVYLTRNRKGNLIERLLFGANLDEYHLEHHLSPGIPFWHLKRAQKI
RLRDRQYAEIADSWGGLFARGPNGQPSVISQLLERNRRLYEAQLERLPGEERV