Protein Info for QEN71_RS41250 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 22 to 47 (26 residues), see Phobius details amino acids 81 to 105 (25 residues), see Phobius details amino acids 117 to 138 (22 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 191 to 214 (24 residues), see Phobius details amino acids 245 to 267 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 94 to 274 (181 residues), 58 bits, see alignment E=5.5e-20

Best Hits

KEGG orthology group: K11078, mannopine transport system permease protein (inferred from 60% identity to rhi:NGR_b10570)

Predicted SEED Role

"FIG01075765: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (283 amino acids)

>QEN71_RS41250 ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MNTINVSASQVVNSKSPSSVGTLALVGFALLVLLFLIGPILIILVMSVGDASYIQFPPHV
LSLKWYVQYLADADWMSATLFSLKVACATTVSSTVIGTMAAMALVRGIFPGKAAIQAIAL
SPLVVPHIVIAIALYLFFAPVGLVGSFGGFLIAHTVLAVPYVVITVSAALKSFDPILERA
ALNCGATRLNAFFSIVLPDIVPGVAAGAVFAFLASFDEATVAFFISDTGGKTITRKFFED
IDYNLTPIIAAVATMTIVLSLALMTGIRTLERRASAKSGKVNL