Protein Info for QEN71_RS39380 in Paraburkholderia sabiae LMG 24235

Annotation: ATP-binding sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1835 transmembrane" amino acids 188 to 206 (19 residues), see Phobius details PF00069: Pkinase" amino acids 48 to 261 (214 residues), 90.7 bits, see alignment E=7e-29 PF07714: PK_Tyr_Ser-Thr" amino acids 93 to 253 (161 residues), 58.1 bits, see alignment E=5.9e-19 PF13191: AAA_16" amino acids 294 to 483 (190 residues), 149 bits, see alignment E=1.2e-46 PF01590: GAF" amino acids 1310 to 1452 (143 residues), 59.4 bits, see alignment 3.8e-19 PF13185: GAF_2" amino acids 1310 to 1453 (144 residues), 44.2 bits, see alignment E=1.5e-14 PF13492: GAF_3" amino acids 1385 to 1454 (70 residues), 30.2 bits, see alignment (E = 3.5e-10) TIGR00229: PAS domain S-box protein" amino acids 1463 to 1585 (123 residues), 64.4 bits, see alignment 5.5e-22 PF13188: PAS_8" amino acids 1467 to 1527 (61 residues), 28.5 bits, see alignment (E = 7.2e-10) PF00989: PAS" amino acids 1468 to 1555 (88 residues), 34 bits, see alignment 1.7e-11 PF08448: PAS_4" amino acids 1478 to 1581 (104 residues), 32.3 bits, see alignment 6.6e-11 PF13426: PAS_9" amino acids 1478 to 1578 (101 residues), 47.6 bits, see alignment 1.2e-15 PF08447: PAS_3" amino acids 1489 to 1555 (67 residues), 35.3 bits, see alignment (E = 7.5e-12) PF02518: HATPase_c" amino acids 1720 to 1829 (110 residues), 85.4 bits, see alignment 2.4e-27

Best Hits

KEGG orthology group: None (inferred from 74% identity to bpy:Bphyt_2428)

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1835 amino acids)

>QEN71_RS39380 ATP-binding sensor histidine kinase (Paraburkholderia sabiae LMG 24235)
MGKRLQILWDDGERVLSRGRHPTEDSSRNVLLVQPAAEHPLPASLDRLAREFDLKDELGD
AWAVQPLALLRESRRPLLVLDDPGGEPLAGLLGKPMEMGEFLRLAVGIAAALGKLHQRGL
VHKDLKPAHILVNCADGNVRLTGFGLASRLPRERQAPEPPETIAGTLAYMAPEQTGRMNR
SIDSRSDLYAFGVTLYQMLTGVLPFTATEPMEWVHCHIARKPVPPSAREESVPAAVSLIV
MKLLAKTAEDRYQTAAGVEHDLKHCLADWRSERRVQEFRLDEHDTPDRLMIPEKLYGREH
EVNTLVAAFDRTVRNGAPELALVSGYSGIGKSSVVNELHRVLVPPRGLFASGKFDQYKRD
IPYSTLVQAFQGLVRPLLGKPETELASWRAALLEALEPNARLMTDLIPELKLIIGDPPPV
AELAPKLAQRRFMVLFRRFIGVFARPEHPLALFFDDLQWLDAATLDLLEDLLTRSDLRHL
MLVGAYRDNEVDAMHPLTGRLQAIRNAGVRIEEITLTPLASAHIQQLIAEALHTERQQIE
PLAQLVHDKTAGNPFFVIQFLHALADEELLAFDHDARRWSWNSHRIHAKGYTDNIVDLMI
GKLTRLPTETQNALQQLACLGNVADITTLSTVVAMSHERLHAVLWEAIRQELIGRQEDTY
KFVHDRVHEAAYSMIPQASRAEAHLRIGRLLAAHTPPEKRNERIFEIAGQLNRATALIGS
REEREQLAEFNLLAGLRAKVSTAYASALIYLVAGVELLDDDCWERRHELIFALELNRAAC
EYLTGQPSAADERLTALSNRATTTVEKASVACLHTDVCSTLDQSSRAVAVCLDYLRHVGI
DWSPHPQDDEVRSEYKRIGLLLGDRPIEALIDLPLMQDPAHLATAEVLSKLFAPAVQTDA
NLASLMSCKAVNLSLERGNCDASCVPYAMVGRIAGPRFGDYQFGFRFGQLGYELVDRRDF
RRFEASAYSVFASFVLPWMKHIRVSADVLRRALKAANRIGDLTYGAYTSKNLNSGLIFAG
EALVDVQNEAEHGLAYAERMRFGLVIDFISAQLALIRMLRGQTARFGCFDHAQFSEPQVE
EHLSSNPALAVPACFYWIRKLQARYLAGDYAAATEAAVNAKRLLWSSSSFIEEAEYHFYA
ALTIAAICLSASADERTQHRDALAAHHAQLQIWATNCPENFASRAALLGAEIACIEGRLI
EAEQLYEQAISSAQQNGFIHIEALANELAARFYARRELDKIARVYLQDARYGYLRWGADG
KVRHLEELHPFLNTEASAPGPTTTMATPVEHLDLATVIKVSQAASGEIVLEKLIEMIMRT
AIEQAGGDRGLLILSAGGEHRIAAEVTTGGDTTQLQLCDAPVSAAMLPESILYHALRTRE
SIFLDDAAAASVFAADPYIHEHHARSILCMPLMNQAKLIGALYLENNLTARAFSPARIAV
LKLVASQAAISLENARLYRDVTEREVKIRRLVEANIIGIIVWNARGDILEANDAFLRMVG
YEREDLVSGRVRWLDLTPPESREDSEQALAEAIRTGRAQPYEKEYVSKDGRLVPVIVGLA
SFEASRKEGVAFVLDLTERKEAEKKVRESEHRFREVQTELEHANRVATMGQLTASIAHEV
NQPIAATVTSAQAALRWLRAQPPNIGEVDQVLSRIVKDSTRAADVLGRIRQMVKKAPPRK
EPVDINEAIREVIELTRGEVAKSGASVETQLSDGLPLIEGDRVELQQVLLNLIVNALEAM
SGVSEDTRHLQIDTRHDDSNCVLVTVRDSGPGFSVQNTEHIFAPFYTSKPTGLGMGLSIC
RSIIDAHGGRLWASPNEPRGATVQFTVPAHAALPA