Protein Info for QEN71_RS39055 in Paraburkholderia sabiae LMG 24235

Annotation: benzoate 1,2-dioxygenase electron transfer component BenC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 930 PF00111: Fer2" amino acids 10 to 84 (75 residues), 53.4 bits, see alignment E=5e-18 PF00970: FAD_binding_6" amino acids 109 to 201 (93 residues), 55.2 bits, see alignment E=1.9e-18 PF00175: NAD_binding_1" amino acids 211 to 314 (104 residues), 75.3 bits, see alignment E=1.5e-24 PF07729: FCD" amino acids 353 to 476 (124 residues), 61.9 bits, see alignment E=2e-20 PF00067: p450" amino acids 747 to 885 (139 residues), 59.9 bits, see alignment E=5.2e-20

Best Hits

KEGG orthology group: None (inferred from 88% identity to bge:BC1002_5951)

Predicted SEED Role

"benzoate dioxygenase, ferredoxin reductase component" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (930 amino acids)

>QEN71_RS39055 benzoate 1,2-dioxygenase electron transfer component BenC (Paraburkholderia sabiae LMG 24235)
MPHQITLRFEDGVTRFIECAEGERITDAAIRARINIPLDCRDGVCGTCKAVCESGEYILG
DCVEDALSPEEASARKVLTCQMSPRSDCAIQIATNSDVSGTGPATHKGRVVACQRASNTT
IAFSVEIENRADLTFLPGQYVNIRVPGTDQTRSYSFSSGPSEPHLSFFVRNVRQGMMSTW
LCETAKAGDPIEFRGPMGSFYLRPVERPLLFLAGGTGLAPFLSMLDKIVEDGGSPYPIHM
ILGVNSDDDLVGIDRLERYAQRLPNFTYACTVASPESAHPNKGYVTHHIRASQLNGGDAD
VYLCGPPPMVDAVRSFLSSEGLTPRNFYYEKFAGTGLVVQTGEERIAPVDVDEAFDLRMI
LELGAAQLTMGRLSSEQLIAFRQLAEATAQFVSGPRFTEVSRYIEANHAFHMFTIEASGN
SQLIALYRQLAVQDYIARALTGQIEIVGDVVQQHRDLVTAFELGDLNAARDVIARHAIHS
RSTMGRALACMTNGKAAAPKTEAPRALPSAAPDRAPQICPFTASTLPPYSHELDWPEGLE
PFKVVDDGSQGDPYEHYRWMREHAPVLRCQSATSDVWFLSRYDDVYQAIRNPKLFSSEVV
SPPPLTFLTLFDAPGHSRLRKVVQPSFLPLALDPFIEQIAQRAEDLLDAMIAKGGGDVVN
DFAIPLSISTISAMIEVPNEDEEKMKFWSDETFSYFGRLARNAPGTGTDEQSAQAFFAYL
KDAMERLARTDSQSIGGHIARMWKDGLLSEKEAKELCAFVFIAGHDTTTILVANAFRMFA
EQPHLLGRIREQPDDADRFVEEVARYRGTVQRVSRITTEATTVAGIDLPKGAVVRLLLSA
ANRDNRKFAEGETFDIDRDSSGHLGFGNGMHKCLGAPLAKLETLIAAKALARKVSNIALD
PTRPIQYVRGNNLTNSGPEHLFVKFGEIVA