Protein Info for QEN71_RS38320 in Paraburkholderia sabiae LMG 24235

Annotation: sigma 54-interacting transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 772 PF00158: Sigma54_activat" amino acids 20 to 184 (165 residues), 210.6 bits, see alignment E=3.1e-66 PF14532: Sigma54_activ_2" amino acids 20 to 190 (171 residues), 56.2 bits, see alignment E=1.1e-18 PF07728: AAA_5" amino acids 43 to 161 (119 residues), 22.2 bits, see alignment E=3e-08 PF02954: HTH_8" amino acids 285 to 323 (39 residues), 37.6 bits, see alignment 3.6e-13

Best Hits

KEGG orthology group: None (inferred from 94% identity to bph:Bphy_5612)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (772 amino acids)

>QEN71_RS38320 sigma 54-interacting transcriptional regulator (Paraburkholderia sabiae LMG 24235)
MSSPPVIPFAQNKTNPGAFVGAAPAFRQLVRLIDRVAPTDHALLIFGPTGSGKELVARRV
HMRSLRHDQPFVDVNCGAIPEHLVEAELFGHVKGAFTGAADNRQGLFQQVGKGTLLLDEI
GEFPLALQPKLLRVLETRTFRPIGSSTNVRFEGRVVAATHRDLRELSREGRFREDLFYRL
AVFVLGVPGLEQRVEDIPALVTHFASQQPRSLEFSPAAIRRLSQHTWPGHIRQLRNLISQ
LSVLAENTLIDVDTLEPFLANEASGPVSRASLADMLLQLDGRDKLAAAEDLLIDRALERT
AGNKSAAATLLGVGRKTIERRLKSREEHHREAHKCLEHATALIAESRFAEAIPPLRRCLD
VLQANNEQDSVRRLQFDAYRMLGMSLRSVHGWLYAEATACYAAALAVGEGVCEPAEIAAI
QFGVWTTQLTTLQLKQARATAQDMLQRAQNSGDRVSLDEAHVAMTNTLFWLGDSEEALAC
LARGNLLGVGRHDMRTGSQGIDLASLALTFEGLAAYQIGAFAQARRAMEMLIARASEPGP
HAFAHAVNLQGASWLACLFDDAERLGRLASELESVSIANGFAFYRGVGQILRACDLSKRG
HSDEAETIMLDGFDNHVVCNGGALFYSFMAWQHGELLLRAGRAHTCDEMLAKAVDETLAR
QERVYLGELLVTRARAQWAIGDLTSAEQGLRAALSTALAFGSVPARVDAARYLATLLQST
DRRAEAIDTLERGLRALPPDPTTRIASAVALLAELRQEVSLDNDNEGIAHGL