Protein Info for QEN71_RS38300 in Paraburkholderia sabiae LMG 24235

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 16 to 500 (485 residues), 363.8 bits, see alignment E=7.1e-113 PF02321: OEP" amino acids 71 to 283 (213 residues), 67.5 bits, see alignment E=7e-23 amino acids 318 to 498 (181 residues), 102.1 bits, see alignment E=1.8e-33

Best Hits

KEGG orthology group: None (inferred from 90% identity to bph:Bphy_4998)

Predicted SEED Role

"Outer membrane component of tripartite multidrug resistance system" in subsystem Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (513 amino acids)

>QEN71_RS38300 efflux transporter outer membrane subunit (Paraburkholderia sabiae LMG 24235)
MNARDLSFRTPALAVLFSLALSGCLVGPNFERPAQSSPNVFDRTQTAQAPSKPVESGFNA
HWWELFNDPTLNALEQQLADANLDVAAASARLRQSRAEQRVAGAAEYPTLTGAASYNRER
GSENGILSLLGVTPTSQQPQSASGSAPLGVSAMPGSKGSPAYDLYQFGFDASWEVDIWGR
VRRSVEAASALTDASYEERNAVLLSARAELARDYIQLRDTQALLQIAQQNLDIARDATKL
TKTRVREGVTTDLDVANASAQEATIESLIPTLESRRETTINAIGVLLAKEPGALRQMLVD
PRDVPHLPEQVPIGFPSELAQRRPDIRKAEAQLHAATAAIGMAKADFYPRISLNGSAGFQ
SLQLSNLADWASGQFVVGPSITLPIFEGGRLKGTLQLREAQQQEAAIVYKRTVLQAWREV
DDALIVYDAEQQRHNRLEAVVDLNLRALSIARQRYKAGAVDFLDVLNVQKQLLDAQSNLE
QSRADAAANLITLCKVLGGGWESTYVKADAAPH