Protein Info for QEN71_RS38210 in Paraburkholderia sabiae LMG 24235

Annotation: flagellar hook protein FlgE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 TIGR03506: flagellar hook-basal body protein" amino acids 1 to 395 (395 residues), 314.7 bits, see alignment E=6.1e-98 PF00460: Flg_bb_rod" amino acids 5 to 33 (29 residues), 37.6 bits, see alignment (E = 3.5e-13) PF22692: LlgE_F_G_D1" amino acids 83 to 145 (63 residues), 41.7 bits, see alignment E=2.1e-14 PF07559: FlgE_D2" amino acids 161 to 287 (127 residues), 77.1 bits, see alignment E=4.1e-25 PF06429: Flg_bbr_C" amino acids 368 to 412 (45 residues), 56.5 bits, see alignment 3e-19

Best Hits

KEGG orthology group: K02390, flagellar hook protein FlgE (inferred from 58% identity to bch:Bcen2424_3022)

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>QEN71_RS38210 flagellar hook protein FlgE (Paraburkholderia sabiae LMG 24235)
MSYATALSGLAGASKDLDVISNNIANASTVGFKSAQAEFADMYASAMTTAVANQVGIGVR
VSTVAQDFTEGSITSTNRDLDVAINGNGFFELSQNGATVYSRNGQFFMARDGSIVNADGL
HLMGYAADANGVINPGQVVPLTIPTTDIAPTVTRNIGLSFNLNSQDPLPKTTPFSPTDPQ
SYTGLTTMPVYDSLGGTQLVNIYFVKNSVGSWTAYGTSGTPPTPVGPSANGSLGTITFDT
GGNVTSPNPMSFAFTIPNGADGGATTQPLTLDLSGTTQYGQSTGVTSPPNIDGAPAGELE
RYSVGPDGVITGVFTNRQSRALGQVVLANFANPNGLTNLGNNLYGQTVEAGVPQVAVPGS
TNHGQLQGGAVEESNVDLTSELVNLITAQRDYQANSQSIKTQQTVDQTLINL