Protein Info for QEN71_RS37450 in Paraburkholderia sabiae LMG 24235

Annotation: winged helix-turn-helix domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 976 PF00486: Trans_reg_C" amino acids 20 to 92 (73 residues), 65.4 bits, see alignment 2e-22

Best Hits

KEGG orthology group: None (inferred from 57% identity to bgf:BC1003_1781)

Predicted SEED Role

"Signal transduction response regulator / Disease resistance domain-containing protein / Tetratricopeptide repeat-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (976 amino acids)

>QEN71_RS37450 winged helix-turn-helix domain-containing protein (Paraburkholderia sabiae LMG 24235)
MIRIGPLEIDLARREARVDGKTVRISNRAFDILELLIEAQGGLVSKEAILERVWPETVVG
DNNLQVHMSALRKLLGESRDLIKTVAGRGYRLVRGAPVARQLGDTGRRTSVPHNLPAYSS
ALVGRDDAITHVCDALGNSRHVTLLGSGGIGKTRVAIEVARHLLEQAPGGVHVVSLSAAS
DTNGVLAMLASVLGVHPEGSAATRERIVEAIGGRRMLIVLDSCEHVVDAAAQLAHHLLTA
CPQLRVLSTSREPLRIPSETLYWVPALDVSEPNDDTPQVLRCSAVNLFLMRARAIDARFA
ADEPSIHVTGMVCRRLDGIPLAIELAAARAALLGIDTLAAHLDDRFGMLTGGTRTALPRH
QTLKATLDWSHALLDEAERKTLRRIGVFADRFPLEAAIAVAADRVTRELDVVAAVAALVE
KSLVVASTEPGHAAFRLLETTRMYALQKLDDNGERRMVALNHARYLSALIDGDAAGKSAG
ESWRSRMPALLDEVRAALSWVLSDDGDEALRETLPVNAVFLLYELSLIDECCVWARRALA
ALPADSARTSPRMRTRLRLLAALGASLVLVHGPNAETHTIWNDVLTSAVASGDEAFEARA
LWGMWNACQTSGSVHDALEYARRYTAFVADAADVRGAILAYRLMGVAAHYAGDQRCARLS
FEQLLEVGDSLRTRMPLGHFADQVLVSRASLARVLWLQGLRDQALALAEDAVIEACSKDQ
AMIVCYALAEALVPLSLLSGKRDCARRAIAVLRDTSSRARLTLWQAAARCFDAWLRSLDD
VSAQSLDGFRAALAELDALKFGAPFAMLAAQYAIALMRAGRHDEAKHVVDSALARCDLAG
DFWFIAELRRLRGELPLAGGAVIDSDSDAGRDAETWFVAALEEASAQGARSLQLRAATSL
ARLWHRLGRETEAAQLLQSACANVCEGRDFDDFKAAGQLLMQVKGLVHKPVATSGERRHA
DKTTRLLSAPSLRKYA