Protein Info for QEN71_RS37120 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 transmembrane" amino acids 21 to 49 (29 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details amino acids 91 to 115 (25 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 175 to 192 (18 residues), see Phobius details amino acids 262 to 285 (24 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details amino acids 354 to 377 (24 residues), see Phobius details amino acids 389 to 409 (21 residues), see Phobius details amino acids 415 to 439 (25 residues), see Phobius details PF07690: MFS_1" amino acids 32 to 404 (373 residues), 111.7 bits, see alignment E=3.8e-36 PF00083: Sugar_tr" amino acids 55 to 452 (398 residues), 141.9 bits, see alignment E=3e-45

Best Hits

KEGG orthology group: K08369, MFS transporter, putative metabolite:H+ symporter (inferred from 84% identity to bgf:BC1003_2080)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>QEN71_RS37120 MFS transporter (Paraburkholderia sabiae LMG 24235)
MQMDVGIGARLDRLPLSGFHWRLLGLIAAGMYFDSFDIYIAGTVLAAMIHSGESTLSLNA
AFVSVTFIGMMTGAWLSGLLGDRFGRRFCYQFNLGIYGFASIAAALAPSIYWLIFFRLVM
GVGMGAEIVVGYGTLSEFIPAVWRGRFGTILNLIINTSLFLSTFLGWLIVPQYGWRWMFA
IAGCGALVVWFLRKSMPESPRWLASRGRGDEAREIVERIETACGGAASHTPSHTPIAHET
STREFYSNDQGRLSDLFSRRLLTRTITAITVLVALFTVNYAFVSWIPTFLVKQGHSVSNS
LGLTALMFAGGPVGSLIAFALAEHLGRKWGIVMFSLVCVAFGIAYPFAQSAVAITALGFA
ITCCIYVLSSFSVATYVPELFPTELRLRGSGLANTVGRAVSIAVPYAVAGSFTRFGIGGV
LTLIVGTLLVQALIVGVIGAETKQRSLESIAADAAVTSEEAVEGGATAAMK