Protein Info for QEN71_RS36600 in Paraburkholderia sabiae LMG 24235

Annotation: carbohydrate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 78 to 103 (26 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 189 to 214 (26 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 95 to 272 (178 residues), 60.4 bits, see alignment E=9.9e-21

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 81% identity to bgl:bglu_2g04060)

Predicted SEED Role

"ABC-type sugar transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (283 amino acids)

>QEN71_RS36600 carbohydrate ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MYPLPVERWKPWNRAIYKASLPLALFVWLLPMLAVLITSIRSSDELSQGDYWTWPKHFAL
LDNYGTALTQTPMLHYFANSVLITVPSVLGAILLASMAGFALATYRFRGNIIVLFTFVAG
NFVPVQILMIPVRDMALKVGLFNTVWALIIFHIAFQTGFCTLFLRNFIKQLPFELIEAAR
VEGASEWTVYARIVLPLIRPALAALGILVFTFVWNDYFWALCLTQGDDAAPITVGVAALK
GQWTTAWNLVAAGSVLAALPSVLMFFAMQKHFVAGLTFGASKG