Protein Info for QEN71_RS36585 in Paraburkholderia sabiae LMG 24235

Annotation: sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 PF00005: ABC_tran" amino acids 21 to 162 (142 residues), 111.9 bits, see alignment E=8.1e-36 PF17912: OB_MalK" amino acids 244 to 298 (55 residues), 48.4 bits, see alignment 2.8e-16 PF08402: TOBE_2" amino acids 291 to 360 (70 residues), 44.5 bits, see alignment E=2.8e-15

Best Hits

Swiss-Prot: 50% identical to UGPC_BORPE: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

KEGG orthology group: K10111, maltose/maltodextrin transport system ATP-binding protein [EC: 3.6.3.19] (inferred from 71% identity to bgf:BC1003_5319)

Predicted SEED Role

"Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19)" in subsystem Maltose and Maltodextrin Utilization (EC 3.6.3.19)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.19

Use Curated BLAST to search for 3.6.3.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (383 amino acids)

>QEN71_RS36585 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC (Paraburkholderia sabiae LMG 24235)
MSAISLRNIQKTFGANAPVIRDLNLDIGAHEFCVFLGPSGCGKSTLLRIVAGLEDQSDGD
VTIGGHSMNGVPAAERGVAMVFQSYALFPHMSVYENMAFGLKLAKTPKPEIDRKVREAAR
VLQLDALLERKPRELSGGQRQRVAIGRAIVREPGVFLFDEPLSNLDAALRGQTRIEIARL
HQRFAQASVVYVTHDQIEAMTLADKIVLLHAGADTQRFGSIAQIGAPLELYHRPRSKFVA
GFIGSPRMNFIDGDVDAVAHDGVHVKLKKSASTLRVQVDGARLKRGQPVTLGIRPEHIRL
DGDAQTLAVKSLITEQLGEHSYVHVECADGTLIAKAPGDVAIRNGEPLALRLPADACHLF
DEEGIALERTVAMETQSVALQTA