Protein Info for QEN71_RS36435 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 76 to 97 (22 residues), see Phobius details amino acids 108 to 132 (25 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 191 to 219 (29 residues), see Phobius details amino acids 240 to 264 (25 residues), see Phobius details PF00528: BPD_transp_1" amino acids 88 to 269 (182 residues), 50.5 bits, see alignment E=1.1e-17

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 56% identity to pmy:Pmen_4203)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (278 amino acids)

>QEN71_RS36435 ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MLSFPAYVTIWGRLGRWAHVVLSVAVLVFLISPILVVMPLSFNSQPYFTYPMPGVSLRWY
QDFLNSPEWMLALKNTLIVGVVSTLLATTLGVMASLGLTHPRLKGRALITGILVSPMIVP
LIITAVGVYFAFSPFGLVNSLTGLILAHAALGVPFVVVTVTATLAGFNETLSRAGRSLGA
SPMRVFMQVKLPIIAPGVISGALFAFATSFDEIVVALFLTGTDQRTVPRQMWAGIREQLS
PTILAVASVLVVISTLLLVTLELLRRRTERLRGTANQF