Protein Info for QEN71_RS36140 in Paraburkholderia sabiae LMG 24235

Annotation: TRAP transporter large permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 53 to 76 (24 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 142 to 165 (24 residues), see Phobius details amino acids 176 to 200 (25 residues), see Phobius details amino acids 221 to 244 (24 residues), see Phobius details amino acids 250 to 266 (17 residues), see Phobius details amino acids 278 to 302 (25 residues), see Phobius details amino acids 322 to 353 (32 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details amino acids 404 to 431 (28 residues), see Phobius details PF06808: DctM" amino acids 11 to 427 (417 residues), 313.3 bits, see alignment E=1.2e-97 TIGR00786: TRAP transporter, DctM subunit" amino acids 21 to 432 (412 residues), 341.9 bits, see alignment E=2.2e-106

Best Hits

KEGG orthology group: None (inferred from 40% identity to dsh:Dshi_3001)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (435 amino acids)

>QEN71_RS36140 TRAP transporter large permease (Paraburkholderia sabiae LMG 24235)
MTQLFIGAGMFGGLLAVLSVGVPIAFALLFIALVSLFVTGGGWDALSLIPSTYWGSVATF
TLTSVPMFMFMGAIVSASGMGARLYSALATILDGVPGGLAVATTLACGVMAAVSGSSVAT
AAAIGGFAVSEMRRHGLPAGQACGSVAAGGTLGILLPPSIPLIVYSVIAEQSIGRLFIAT
LVPGAIMALAFGLFQMTLALRRKSRGDVRTRPLAPLKARIVALKDIGPFALLILIILGSL
YRGLATPQEAASLGIIASLILAGVVYRELSWRKFREILINAAQSSVMILAVISSAIVFGY
VMTTSQVASSLTQLVAGAHVAPWVLFVSINLLLIFLGCFMETIAIIVVTMPVLVPVVQAY
HWDLIWFGVVIVINMEMALIHPPVGLNLFVVQSVAPDVPLRRIVLGTLPYVFIMAGVLAL
IGIFPQLTMLIPGAR