Protein Info for QEN71_RS36105 in Paraburkholderia sabiae LMG 24235

Annotation: HAMP domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2015 PF18947: HAMP_2" amino acids 280 to 342 (63 residues), 31.2 bits, see alignment (E = 1e-10) amino acids 372 to 434 (63 residues), 29.9 bits, see alignment (E = 2.7e-10) amino acids 464 to 526 (63 residues), 31.7 bits, see alignment (E = 7.1e-11) amino acids 556 to 617 (62 residues), 32.9 bits, see alignment (E = 3.1e-11) amino acids 648 to 710 (63 residues), 31.8 bits, see alignment (E = 6.6e-11) amino acids 740 to 801 (62 residues), 29.8 bits, see alignment (E = 2.9e-10) amino acids 832 to 894 (63 residues), 30.3 bits, see alignment (E = 2e-10) PF00672: HAMP" amino acids 293 to 343 (51 residues), 38.7 bits, see alignment (E = 6.3e-13) amino acids 384 to 435 (52 residues), 41.2 bits, see alignment (E = 9.9e-14) amino acids 478 to 527 (50 residues), 36.6 bits, see alignment (E = 2.9e-12) amino acids 569 to 618 (50 residues), 36.1 bits, see alignment (E = 3.9e-12) amino acids 662 to 711 (50 residues), 38.9 bits, see alignment (E = 5.1e-13) amino acids 752 to 802 (51 residues), 39 bits, see alignment (E = 5e-13) amino acids 844 to 895 (52 residues), 40.8 bits, see alignment (E = 1.3e-13) amino acids 936 to 986 (51 residues), 31.1 bits, see alignment (E = 1.4e-10) amino acids 1029 to 1079 (51 residues), 25.9 bits, see alignment (E = 6.2e-09) PF13185: GAF_2" amino acids 1106 to 1247 (142 residues), 54.2 bits, see alignment 1.1e-17 PF01590: GAF" amino acids 1108 to 1247 (140 residues), 25.7 bits, see alignment 8.6e-09 PF00512: HisKA" amino acids 1326 to 1393 (68 residues), 60.3 bits, see alignment (E = 9.3e-20) PF02518: HATPase_c" amino acids 1441 to 1564 (124 residues), 100.7 bits, see alignment 4.1e-32 PF00072: Response_reg" amino acids 1632 to 1737 (106 residues), 53 bits, see alignment 2.1e-17 amino acids 1898 to 2008 (111 residues), 96.9 bits, see alignment 4.9e-31

Best Hits

Predicted SEED Role

"probable sensory histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2015 amino acids)

>QEN71_RS36105 HAMP domain-containing protein (Paraburkholderia sabiae LMG 24235)
MDTFEVESPLQSNDQLAHIAAALNALRRGDTSYRLPEDWTGDAGKVAAEFNMLSSQTRHI
GQGLGRMSRHLSGHGVLKKDVAIESSALTGVWLDSASHVNLLFDSVTTAHESTKTVLAAL
ASLQKGEAVSLPADWPGIHGKVAHVFNDVVEQNVRIAEELGRLSKVVGKEGRLKERAALP
YARGFWGDSIDAVNSLIADLVHPTSEVARVIGAVAQGDLSKSMALEADGRPLQGEFLRTA
KTINTMVEQLGTFAVEVTRVAREVGTEGKLGGQADVQGVAGTWKDLTDSVNSMAGNLTSQ
VRNIAEVTMAVAAGDLSKKITVDVKGEILELKNTINTMVDQLRSFASEVTRVAREVGTEG
KLGGQADVQGVAGTWKDLTDNVNFMAGNLTSQVRNIAEVTKAVAAGDLSKKITVDVKGEI
LELKNTINTMVDQLRSFASEVTRVAREVGTEGKLGGQADVQGVAGTWKDLTDSVNSMGGN
LTAQVRNIADVTTAVAAGDLSKKITVDVKGEILELKNTINTMVDQLRSFASEVTRVAREV
GTEGKLGGQADVQGVAGTWKDLTDSVNSMAGNLTAQVRNIADVTTAVAAGDLSKKITVDV
KGEILELKNTINTMVDQLGSFASEVTRVAREVGTEGKLGGQADVQGVAGTWKDLTDSVNS
MGGNLTAQVRNIAEVTKAVAAGDLSKKITVDVKGEILELKNTINTMVDQLRSFASEVTRV
AREVGTEGKLGGQADVQGVAGTWKDLTDNVNFMAGNLTSQVRNIADVTKAVAAGDLSKKI
TVDVKGEILELKNTINTMVDQLGSFASEVTRVAREVGTEGKLGGQADVQGVAGTWKDLTD
NVNFMAGNLTSQVRNIADVTKAVAAGDLSKKITVDVKGEILELKNTINTMVDQLRSFASE
VTRVAREVGTEGKLGGQAYVQGVAGTWKDLTDNVNFMAGNLTSQVRGIAKVVTAVANGDL
ARKLTVEAKGEVAALADTINSMTETLATFADQVTTVAREVGVEGKLGGQAKVPGASGTWK
GLTENVNQLAANLTTQVRAIAEVATAVTQGDLTRSITVVALGEVAALKDTINEMIRNLKD
TTQVNTEQDWLKTNLAKFSRMLQGQKDLVAVGQLILSELAPVVGVQQAEFFVLDSSERAS
ERAASLMLMASYASSGHSSHGKRVQLGEGLIGQCAVERRKILLESSVGERVRITSGLISL
VPHNVLVLPVIFEGQVKGVIELASSECFNPTHLAFLDQLTESIGIVINTIEANTRTEDLL
KQSQSLARELQSRQEELQTTNEELQEKARLLAHQNQEVERKNTEVEQARQALEEKAKQLA
LTSKYKSEFLANMSHELRTPLNSLLILSDQLCKNSEGNLSTKQIEFSRTIHSSGNELLML
INDILDLSKIESGTVVMDFAEHRLADLTSYVERTFRHVAEARNVDFVIELGTHLPASIRT
DIKRLQQILKNLLSNAFKFTHRGHVTLSVDEVSAGWTADHEGLDGAPACIAFSVSDTGIG
ISADKQQIIFEAFQQADGSTSRKYGGTGLGLAISRELSKLLGGEIRLASSPNKGSTFTLY
LPLAGEMGRVARKTLAVSGDEIPAVALDGAIGKAVDLVAAHEFVDNVVSETHDLAGTHDD
DRFNITAEDRVVMIVENDLAFAHFLLDVAREQGFKGLVTPLGAPALTLADEFKPDVITLD
LFLPDMDGWRVLGRLKNDMATRHIPVCMISTDESRERALRAGAFAFLPKPIQSREVLDDA
LGVLARYASAAPRKLLVALPESPERKQFAALLSSERITPIYAETREQILNALSDEQLCGV
VVDERTFDASLDDMKAALAHRGLFAPLPLIVFAPGQTAGAWTREIECFNPFIAPDLSRLI
DLCVGRLHIDRKWLPDQALAIIESLHGSSADLAGRKALIVDDDMRNIFALATVLEDHGMH
HVWADNGRDAIRLVETDADIDIVLMDIMMPEMDGLVTTSEIRKLPVGRTLPIIAVTAKAM
KGDRERCIEAGAWDYLSKPVNRDDLLAVLLAWLHG