Protein Info for QEN71_RS35915 in Paraburkholderia sabiae LMG 24235

Annotation: branched-chain amino acid ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF13458: Peripla_BP_6" amino acids 16 to 355 (340 residues), 202.8 bits, see alignment E=1.9e-63 PF01094: ANF_receptor" amino acids 35 to 354 (320 residues), 143.1 bits, see alignment E=1.8e-45 PF13433: Peripla_BP_5" amino acids 143 to 340 (198 residues), 30.5 bits, see alignment E=3.1e-11

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 95% identity to bgf:BC1003_2088)

Predicted SEED Role

"Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>QEN71_RS35915 branched-chain amino acid ABC transporter substrate-binding protein (Paraburkholderia sabiae LMG 24235)
MQASAHAADATPAVVLIGHAAPLTGQLANMGKDSENAARLAIDEINSQHPVIGGKPVRLQ
LDSQDDAADPRTGTQVAQKLVDEGVVAVVGDINSGVSIPASRIYNEAQVVQISQGSTNPA
YTQQGYKTTFRVVATDALQGPALARYALNSLHAKRIAVIDDSTAYGQGLADEFTKAAKAN
GGTIVTREATNDKATDFRAILTKIKGMRPDVIMYGGSDATAGPLVKQAANLGMTASVLGG
DGACTEKMVSLAGDAIGNVVCSEAGLALSKMPKGQEFDRRYTARYKVPIDAYAPFAYDAV
YVIYEAMKRADSTERAKILAAMPVTQYDGVIGRIAFDPHGDLKDAAITIYQFKDKKKTVM
DVMRM