Protein Info for QEN71_RS35730 in Paraburkholderia sabiae LMG 24235

Annotation: substrate-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF00532: Peripla_BP_1" amino acids 34 to 249 (216 residues), 68.4 bits, see alignment E=1.1e-22 PF13407: Peripla_BP_4" amino acids 34 to 288 (255 residues), 182.2 bits, see alignment E=2.2e-57 PF13377: Peripla_BP_3" amino acids 157 to 250 (94 residues), 26.5 bits, see alignment E=9.5e-10

Best Hits

KEGG orthology group: K10439, ribose transport system substrate-binding protein (inferred from 69% identity to mlo:mll1012)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (314 amino acids)

>QEN71_RS35730 substrate-binding domain-containing protein (Paraburkholderia sabiae LMG 24235)
MDLKAVTRRVLTIVATATVATYSLCAMADDKIVIGFSQSTLNHPWRIAQTEGNKKYAASH
YPDVKLIVTDGQNNATRQTADVESLMAQGVKVLMISPLTQQALTPVVKQAMDHGIKVVTL
DRRVNTPVTVHVGPEDLPIGRQAGELIAKKLNGQGAIIEIGGTAGASVSIDRDKGFREAI
AKYPGLRIVAFQNCDFLREQSMKFMEDQIQRFKPGEIKAVYAHDDEMALGAIQALEAAGR
LNGIIVVGINGANNAIQSVAEGKLTATFIYPFVAPEGIQTAYKVARGEPVPKDIKLQSTL
ITKDNAAQYIGKGF