Protein Info for QEN71_RS35310 in Paraburkholderia sabiae LMG 24235

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 737 signal peptide" amino acids 1 to 53 (53 residues), see Phobius details PF07715: Plug" amino acids 95 to 196 (102 residues), 51 bits, see alignment E=1.8e-17 TIGR01783: TonB-dependent siderophore receptor" amino acids 97 to 737 (641 residues), 283 bits, see alignment E=2.9e-88 PF00593: TonB_dep_Rec" amino acids 288 to 707 (420 residues), 121.3 bits, see alignment E=1e-38

Best Hits

KEGG orthology group: None (inferred from 69% identity to bpy:Bphyt_4079)

Predicted SEED Role

"Ferrichrome-iron receptor" in subsystem Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (737 amino acids)

>QEN71_RS35310 TonB-dependent receptor (Paraburkholderia sabiae LMG 24235)
MTELRPPKRRNLPRARRPAPRRLPAFALLPLRAALLFSGGVALSLSAPGAWAQSDADTSR
PTTDSALPPVSVKARRDPATDAVVISAGALGARKQVDTPFSTNVKTSEDAKDLMAQSAND
LFRYDPSVAVVGENATAENSAFSVRGMQIDMLNGVKVDGQSFPSWDTDLPLEPFEQVQLL
KGLSGFMYGFGAPGGIVNYVLKRPTDTPYRSVSLGYQSAGVFSEKLDVGGRFGKDDRFGY
RFNLVNENGNTAEANGHLRRQVASVALDFHVTPDLTWSLDAFYAKRKTNGTLFGMWFGEG
VNIPDASSITHDLTQPQNWYKTEMASVGTGLDYRFTPNWHGSLKYRFAKENRYNHDSRLN
IINNAGDYTNTLFAALTRYFYSNVDAMVEGKFHTGSIGHNVVVGAGYQTQVSEYDNSTGW
NDGFNLGSGNLYRSTLLTNDEVNIAQNLYRQSLITQSAIYASDTVQLTSRLSALLGLRYT
QFRQTVYNTDTTVSAGYSAHPVTPTIAVMFKTDPYSTLYASYVESLQAGGSASNTNVNFP
QSYGPLKSKQYEVGYKTDHRTWGGSLALFRVDQGYEYTNTQNAFVQSGTKRYTGVDASGW
LQVADDWRVLGGVMMLNAKGVDIDDALVDGKRVFATPRLVATGRVEYNPKYLRQLTLAFG
GKYTGNMAVDAANTKFIPAYTTFDLSGKYETRIAGKDVTFRAGINNLFNRQYWTTAYGVY
ALPGATRTAVASATLQF